Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00185 ATGCTTCAAAATTCGTTCTTGGTTGAGATGAATTTCTTTTGGGTTCTTTGTTGGGTGGTATCAGTCTCTCTGTTTGTGGCTGCTGCAAACGTGTCATCTTCAAGACCCGCTGTTGTGAACATTGGAGCAATCTTCAACATCGATTCCGTTGTTGGGAAAGTGGCAAAAATTGCATTGGTGGAAGCGGTCAAGGATGTGAACGCCAACAGCAACATTCTTAATGGAACTAAACTCGTTCTCACTATGCAAAGTTCCAATTCCAGTGGTTTCATAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGGTTGCTATAATAGGCCCACAATCTTCTGTGGTTGCCCACATAATATCCCATGTTGCAAATGAGCTAAGGGTTCCTTTATTGTCATTTGCTGCAACAGACCCTACTCTTTCATCGCTGCAGTTTCCTTTCTTTGTGAGGACAACACAGAGTGATTTGTACCAAATGAAGGCGGTTGCTGAAATCATTGATTATTATGGTTGGAAAGAGGTGATTGCCATATATGTGGATGATGATTATGGGCGAAATGGTGTGGCTGCATTGGATGATGAACTCGCTGCAAGGCGCTGTAAAATCTCCTTCAAGGAAGGGATTCAATCAGGAACTGAAGTTGACCGTGGTCAGATTACAAGTTTGCTTGTGAAAGTGGCACTAATGCAATCTAGGGTCATTGTTCTCCATGCACAAACTGATTCTGGATTTATGCTTTTCAATGTGGCGCGTTATCTTGGGATGACAGACAATGGCTATGTGTGGATAGTCACAGATTGGCTCTCTTCTCTTTTGGATTCTTTTTCTCTCCCTTCGGAGACAATGGATGTTCTCCAGGGAGTACTTGTTTTGCGCCAGCATACACCTGATTCAGATAGAAAAAGGGTGTTTCTCTCCAGGTGGAATAATTTAACTGGTGGCTCTTTGGGGTTACATTCTTATGGTCTCTATGCTTATGATTCTGTTTGGCTGGTTGCTCGTGCTATTGATGCCTTTTTCAGTCAGGGTGGGATTGTTTCGTGTACCAATTACACAACTGGTGATAAGGGAGGTGAGCTTAACCTTAATGCAATGAGCATTTTTGACAATGGAACGCTTCTGTTGAAGAACATATTGCAGAGTGATTTTGTTGGATTATCGGGTCGAATGAAATTCCAACCAGATCGGTCTCTTGTTCAACCTGCCTATGATATCCTAAATGTGGTTGGAACTGGCCTTAGGAGGGTTGGTTACTGGTCCAACTATTCTGGTTTGTCAATTGTATCTCCTGAGATATTGTATGCAAAGCCACCTAATAGGTCAAGTGCAAACCAGAAGCTACACAGTGTGATATGGCCTGGAGATACATTATCTAAACCCCGTGGATGGGTTTTCCCAAATAATGGTAGACAATTGAGAATTGGTGTGCCTATAAGAGTCAGTTACCGTGAATTTGTGTCACCAGTGAAGGGAACCGAGATGTTTAAAGGTTTCTGTGTTGATGTGTTCACAGCAGCTGTGAACTTGTTGCCTTATGCTGTTCCATACCGTTTTGTCCCATTTGGAGACGGCCACCAAAATCCAAGTTACACAGAACTTGTCAACTTAATCACAACTGGTTTCTTTGATGGTGCCATTGGTGACATTGCTATTGTCACAAACCGGACAAGGATTGTAGATTTTACACAACCATATGCTGCATCTGGACTTGTTGTAGTGGCCCCTTTCAAGAAAATCAATTCTGGCGGTTGGTCTTTCCTGCGGCCTTTTACTCCTCTTATGTGGATTGTGACTGTTTGTTTCTTCTTTTTCATTGGGCTAGTTGTATGGATTCTTGAGCACAGGATAAATGATGAGTTCAGGGGTCCACCTAGACAGCAAATTATAACCATGTTATGGTCAGTTTTTTACTTGATTATATTACTGCTGTACCTAGCTTAA 1941 0.4245 MLQNSFLVEMNFFWVLCWVVSVSLFVAAANVSSSRPAVVNIGAIFNIDSVVGKVAKIALVEAVKDVNANSNILNGTKLVLTMQSSNSSGFIGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELRVPLLSFAATDPTLSSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCKISFKEGIQSGTEVDRGQITSLLVKVALMQSRVIVLHAQTDSGFMLFNVARYLGMTDNGYVWIVTDWLSSLLDSFSLPSETMDVLQGVLVLRQHTPDSDRKRVFLSRWNNLTGGSLGLHSYGLYAYDSVWLVARAIDAFFSQGGIVSCTNYTTGDKGGELNLNAMSIFDNGTLLLKNILQSDFVGLSGRMKFQPDRSLVQPAYDILNVVGTGLRRVGYWSNYSGLSIVSPEILYAKPPNRSSANQKLHSVIWPGDTLSKPRGWVFPNNGRQLRIGVPIRVSYREFVSPVKGTEMFKGFCVDVFTAAVNLLPYAVPYRFVPFGDGHQNPSYTELVNLITTGFFDGAIGDIAIVTNRTRIVDFTQPYAASGLVVVAPFKKINSGGWSFLRPFTPLMWIVTVCFFFFIGLVVWILEHRINDEFRGPPRQQIITMLWSVFYLIILLLYLA 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00185 646 SMART GluR_14 473 646 IPR001320 GO:0015276|GO:0016020
Cca07g00185 646 SUPERFAMILY Periplasmic binding protein-like I 33 464 IPR028082 -
Cca07g00185 646 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 25 636 - -
Cca07g00185 646 PANTHER GLUTAMATE RECEPTOR 3.3 25 636 - -
Cca07g00185 646 SUPERFAMILY Periplasmic binding protein-like II 449 598 - -
Cca07g00185 646 Gene3D - 154 425 - -
Cca07g00185 646 Gene3D - 437 602 - -
Cca07g00185 646 Gene3D - 57 400 - -
Cca07g00185 646 Pfam Receptor family ligand binding region 58 410 IPR001828 -
Cca07g00185 646 Pfam Bacterial extracellular solute-binding proteins, family 3 494 575 IPR001638 -
Cca07g00185 646 CDD PBP1_GABAb_receptor_plant 40 428 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00185 Cca-Chr7 2317480 2321916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00185 33 636 Ion Channels AT1G42540 64.860 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00185 K05387 - gmx:102661260 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00185 07 2317480 2321916 Cca07g00185 07 2317480 2321916 ECH