Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00176 ATGACTCGTCCCTTCAGATATTTAGGCGAGACCACCTCGTCCGCCCACTCCGCCCTCGTCGACTCCGACTTCGTCGTCATCCTCGCCGCCCTCCTCTGCGCTCTCATCTGCGTCCTCGGCCTcgtcgccgttgcgcgctgcggctgtctcagccgcctccgcctctccgcggccgccgctccccagcctcctcctcccgccgccgccAACAAAGGCGTCAAGAAGAAGGTCCTCCGCTCCCTCCCCAGGCTCACCGCCACCGCCGAATCCGCGGTCAAGTTCGCCGACTGCGCCATCTGCCTCACGGAATTCGCGGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCAGTCATGGATTCCACGTGGCCTGCATCGACGCCTGGCTCAGATCGCATTCCTCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTTTCTCGCTGCGACAAGTGCGGCGGGATCCCTGCTCCGGCGGCCAGCAGCTCCTCCTCCGCACCGGAATCGGAGGCGAGATTGAAGGTTAGGGAGGATGACGTGAATAGGTTCTTGCCTTAG 552 0.5236 MTRPFRYLGETTSSAHSALVDSDFVVILAALLCALICVLGLVAVARCGCLSRLRLSAAAAPQPPPPAAANKGVKKKVLRSLPRLTATAESAVKFADCAICLTEFAAGDEIRVLPQCSHGFHVACIDAWLRSHSSCPSCRQILVVSRCDKCGGIPAPAASSSSSAPESEARLKVREDDVNRFLP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00176 183 Pfam Ring finger domain 96 139 IPR001841 -
Cca07g00176 183 MobiDBLite consensus disorder prediction 168 183 - -
Cca07g00176 183 CDD RING-H2_PA-TM-RING 96 139 - -
Cca07g00176 183 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Cca07g00176 183 PANTHER RING-H2 FINGER PROTEIN ATL8 1 175 - -
Cca07g00176 183 SUPERFAMILY RING/U-box 80 145 - -
Cca07g00176 183 MobiDBLite consensus disorder prediction 154 183 - -
Cca07g00176 183 SMART ring_2 97 138 IPR001841 -
Cca07g00176 183 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 175 - -
Cca07g00176 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 143 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00176 Cca-Chr7 2248774 2250049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00176 5 183 C3H Transcription Factor Family AT1G20823 61.979 9.83e-67 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00176 - - gmx:100794614 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00176 07 2248774 2250049 Cca07g00176 07 2248774 2250049 ECH