Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00172 ATGTTGGTAATGGAAGAGGTACTGTGTGAACTTAGTGATCATGAAAAGAGAAACGAGCAAGGCCTGCCACCGGGTTTCAGGTTTCACCCCACTGATGAAGAACTCATAACCTTTTATTTGGCTTCAAAGGTGTTTAATGAAACCTTCACTAATGTCAAGTTTGCTGAGGTTGACCTCAATCGATGTGAGCCTTGGGAACTTCCAGATGTGGCAAAGATGGGGGAGAGGGAGTGGTATTTGTTCAGTTTGAGGGACAGAAAGTACCCAACAGGACTAAGAACAAACAGAGCAACCGGAGCTGGGTACTGGAAAGCGACTGGGAAAGATAAGGAAGTGTACAGTGCTTCGAGTGGAACCCTACTTGGAATGAAGAAGACTCTTGTTTTCTACAAAGGAAGGGCCCCTCGCGGAGAGAAGACCAAATGGGTCATGCATGAGTACCGTTTGGACGCTCACTTTTCCCACACCTCCAAGGAGGAGTGGGTGATATGCAGGATATTTCATAAATCTGGTGAAAAGAGAACTCCATTGCTCCAACTCCAAGGACATTCTGATGCTTCTTCGCCCTCATTACTTGCAAGCCCCACTTCCTTTACATTGGAATTAGAGTGCCAATCCCAAAGCCCCCTTATGATTCACCACCAACAAGACCAAAACCACCTCTCTCACCCTCATCTTTTCCCATTGCATGCCACAAACCATTCATCAATCTCGGACCTTTTCCTCAAAGCCAAGGAACAAACACTTGCAAAACTAATCAAAACGGAGGACGACGCTAACGCTACGTTGTATCAACATCACTCACTAGATGACCCTAATAATAGCTTCCGGTGGGAGAACAAGTTGAACCATAATATTAATCAAGGGCATTTCATGAACCCTGTCCCTCTTGAGGTGGATGCGGGTCTAATGGCATTCTCAGGAGCTGCAAATGCTGAAGTTAGGGACATGTCCACTTCAACAGTCTTTAACAGGGTAGGGTTGCAGCAGGTGCTAGATGCTGCTCATATCGGAATAGATTCTTGGCCTATGCCCCAGCATGTTTAA 1047 0.4604 MLVMEEVLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNETFTNVKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSASSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDAHFSHTSKEEWVICRIFHKSGEKRTPLLQLQGHSDASSPSLLASPTSFTLELECQSQSPLMIHHQQDQNHLSHPHLFPLHATNHSSISDLFLKAKEQTLAKLIKTEDDANATLYQHHSLDDPNNSFRWENKLNHNINQGHFMNPVPLEVDAGLMAFSGAANAEVRDMSTSTVFNRVGLQQVLDAAHIGIDSWPMPQHV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00172 348 Gene3D NAC domain 31 173 IPR036093 GO:0003677|GO:0006355
Cca07g00172 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 12 285 - -
Cca07g00172 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 285 - -
Cca07g00172 348 SUPERFAMILY NAC domain 17 169 IPR036093 GO:0003677|GO:0006355
Cca07g00172 348 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Cca07g00172 348 ProSiteProfiles NAC domain profile. 22 169 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00172 Cca-Chr7 2210305 2212976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00172 1 175 NAC Transcription Factor Family AT1G76420 74.011 3.66e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca07g00172 NAM 6.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00172 - - gmx:100780313 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00172 07 2210305 2212976 Cca07g00172 07 2210305 2212976 ECH