Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00169 ATGTCGGGATCTGACATGGCAAACAGGGAACCGTTCACCGTTGGGATGcaccaacaccaacaccaacaccaacaccaacatcaacaccaacaccaacaccaacCTCAACTCCATCAAAACATGCGTTTGGACTATGCTCCTGACGGGCCTGTTTTCGCCCCTCCTACTGTCAACATTAACGGCACGGAAACCTCTCCAGCAGCGTTGCCTCCGGGCCTGGGCCTGGcccagccccagcctcagccccagccccagcccATGGTGGGTAGCAACTCTGAACCGCAAAAGAGAAAGAGGGGCAGGCCCAGGAAATATGGGTCTGAAGGTGCCATGGCCTTGTCCTTGACCCCTAACCGTCCTTCTGGTGCTGCCGCCGTGCCGGTTGGCCAGTCCGGCGGGGCATTTCCGCCTTTGGATTCCGCCTCGGCTGGTTCCGGGAAGCGCAGGGGCAGGCCTCGTGGTTCTGTCAACAAGAAGACTTCAAAGTTTGCTGGAGCAGCATCTGATTTTACTCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTGTCAGCAAGAATTATGAGAATTTCCCAGAGTAGTCCAAGAAATATTTGCATCTTAACAGCAAATGGATCCATATCTAATGTGACTCTTCGACAACCTGACTCAACTGGTGGAACTGTAACTTACGAGGGACGATTTGAGATCCTATCACTTGGTGGTTCATTGTTTCAAGTTGAAAATGATCAGAGTGGAAGGATGGGGGGACTGAATGTGTCCTTGTCAGGACCAGATGGCCGTGTGTTGGGAGGCGGAGTGGCAGGTCTCTTGATAGCTGCTTCCCCTGTTCAGGTGGTGTTGGCCAGCTTTGTTTCAGATATTCGGAAGCAATCCAAGTCTGCAAAGAGAATGGAAAATGCATCTGCCCCAGCAAAGGCTTCCACAGCAGGCCAAAGCAGCTCACCATCAAGGGGCACTCTCAGTGAGTCTTCTGGTGGAGCTGGGAGTGGTAGCCCGCTAAACCAAAGCACAGGAGCATGcaacaacaacaatatcaacaacagcatcaataataataccccaacacaaGGCTTTTCAGGCATGCCCTGGAAGTAA 1098 0.4608 MSGSDMANREPFTVGMHQHQHQHQHQHQHQHQHQPQLHQNMRLDYAPDGPVFAPPTVNINGTETSPAALPPGLGLAQPQPQPQPQPMVGSNSEPQKRKRGRPRKYGSEGAMALSLTPNRPSGAAAVPVGQSGGAFPPLDSASAGSGKRRGRPRGSVNKKTSKFAGAASDFTPHVITVKAGEDLSARIMRISQSSPRNICILTANGSISNVTLRQPDSTGGTVTYEGRFEILSLGGSLFQVENDQSGRMGGLNVSLSGPDGRVLGGGVAGLLIAASPVQVVLASFVSDIRKQSKSAKRMENASAPAKASTAGQSSSPSRGTLSESSGGAGSGSPLNQSTGACNNNNINNSINNNTPTQGFSGMPWK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00169 365 MobiDBLite consensus disorder prediction 295 365 - -
Cca07g00169 365 SMART AT_hook_2 146 158 IPR017956 GO:0003677
Cca07g00169 365 SMART AT_hook_2 96 108 IPR017956 GO:0003677
Cca07g00169 365 MobiDBLite consensus disorder prediction 305 365 - -
Cca07g00169 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 288 - -
Cca07g00169 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 346 IPR039605 GO:0003680
Cca07g00169 365 CDD DUF296 171 284 IPR005175 -
Cca07g00169 365 Gene3D - 172 301 - -
Cca07g00169 365 MobiDBLite consensus disorder prediction 73 87 - -
Cca07g00169 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 29 346 - -
Cca07g00169 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 285 IPR005175 -
Cca07g00169 365 MobiDBLite consensus disorder prediction 1 161 - -
Cca07g00169 365 ProSiteProfiles PPC domain profile profile. 167 305 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00169 Cca-Chr7 2147412 2150524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00169 87 365 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 50.173 3.92e-76 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00169 - - pvu:PHAVU_009G008300g 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00169 07 2147412 2150524 Cca07g00169 07 2147412 2150524 ECH