Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00165 ATGGCATACCAAGCGATCCAGGGTCCGAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAGTTATTGAATTCTCAGTTCGGAGACACGACTTACACGAAGGTCTTCGTCGGAGGATTGGCCTGGGAGACTCAGAGCGAGACCATGCGCCGGTACTTCGAGCAGTTCGGCGAGATTCTGGAGGCCGTCGTCATCACCGATAAGAACACCGGCCGATCCAAGGGCTATGGTTTCGTGACTTTCCGGGATCCCGAGGCTGCAAGGAGAGCGTGTGCTGATCCAACACCCGTTATTGATGGAAGAAGGGCCAATTGTAACTTGGCTTCACTTGGTCGACCACGGCCTCTGCCTTATGGACGGATAAGACCTGCCTCCCCTTATGTCGGGAGTTTGCAACCACCCCGTGGTGCTTATGTTGGAGGTTTTGGCTACCAGCAACCGCTTTCCTACAACTATCAACAAGGATTGGTTTACCCTCCTTATGGGTATACGACATATGGACCTGAGTACGTCTACCCACAGAGTCTGTACAACCCATATATGGGGCAACAGTACCTTCAGATATATGGAGTGCCTGGGGCAGTGAATACAACTATTTATCCTTATGGACAATTGGGTCAGGCTATCCCTAGTGGTCATGGTTATTCCGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTACCCTATGGTGGATCCAATGTTAATGCCATAACAACTTCACCCATGCCTGCGATTCAAGCTTCATATCCTAGTGGTACAGTTGTCTGCCCTGAAGATTTTCTATTTATGACTCGGGATCTGCCCGTTTGTTGCCTTTTGAACGTGTGTTTTACTTGTACTTGTCACATTTCTGAATTTAATTCATGCTGCCTAATTTTTTTTTGTGATTGA 894 0.4855 MAYQAIQGPSSGSSSSSGFQLLNSQFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPLPYGRIRPASPYVGSLQPPRGAYVGGFGYQQPLSYNYQQGLVYPPYGYTTYGPEYVYPQSLYNPYMGQQYLQIYGVPGAVNTTIYPYGQLGQAIPSGHGYSAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQASYPSGTVVCPEDFLFMTRDLPVCCLLNVCFTCTCHISEFNSCCLIFFCD 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00165 297 SMART rrm1_1 33 105 IPR000504 GO:0003723
Cca07g00165 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Cca07g00165 297 PANTHER BOULE-RELATED 1 263 IPR037366 GO:0003729
Cca07g00165 297 SUPERFAMILY RNA-binding domain, RBD 31 132 IPR035979 GO:0003676
Cca07g00165 297 CDD RRM_RBM24_RBM38_like 32 107 - -
Cca07g00165 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 120 IPR000504 GO:0003723
Cca07g00165 297 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 263 - -
Cca07g00165 297 Gene3D - 4 119 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00165 Cca-Chr7 2114003 2118496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00165 21 213 C2H2 Transcription Factor Family AT2G19380 29.756 3.16e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00165 - - aprc:113864528 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00165 07 2114003 2118496 Cca07g00165 07 2114003 2118496 ECH