Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00162 ATGGATGTTGTTGACATCTCTTTGCAAAGTCAACGGGTGTCATCTTCCCCTAATCACAATTCCCCTGCTCAGCTGCAACAGGATCAAGTGATGGCGGAGCAGGGTGATGTTAACAAGAACGGTGATTCTGATCCTAGTCATGTGCTAGAAACCAGTGTAATTAGTGAGAGTCAGTTTGAACTTGAAGATGCTAAGACCGTTTCACATCAGGAACTGGTCACTCCAAAGCCTAAAGAAAAGAATGTAAGAGAAATGAAGAATGTGCTAAATGATACTGAGATGATTGAATATGATGAGTATGGCACGCCTCTAGACCGAGAAACATTTATGAAGGAGCTTGAGAATTTCTACAGAGAGCGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTCAAATTGTGGAGAGCTGTTATCAGACTAGGTGGTTATGATGTGGTAACTGGATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCCCCTAAGACTTGTACTACGGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAACATAAGAGAGAGATTGGGGAGCTACAGCTCCCTGTTGGATCATTTCATCAATCTCCAAATGTGGAAAAAGAGACTGCTGTTTACCAGACTTCTGGCTCAGGTAGGGCACGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGACTTCTTGGATACGGTGAGGTTGCTGAGCCAGTTATTAAGGACAAGAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTAAAAAGTATTGGTATGATTAATAAACAGAGGATGTCGTCTAGTCTGGAGCATGCTGAGAAAGCTGCAAATATCGAAGGAGATCGACAACTGGTCACAGCAGTAGTGGACATTGGACCCCCTGCTGACTGGGTGAAGATCAATGTGCGGGAAACTAAGGATTGTTTTGAGGTGTATGCACTAGTTCCTGGGCTCCTTCGTGAGGAAGTGCGAGTCCAATCAGATCCAGTTGGACGTCTTGTTATAACTGGTCTGCCAGAACACGTTGACAATCCATGGGGAATTACCCCCTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTGTGA 1212 0.448 MDVVDISLQSQRVSSSPNHNSPAQLQQDQVMAEQGDVNKNGDSDPSHVLETSVISESQFELEDAKTVSHQELVTPKPKEKNVREMKNVLNDTEMIEYDEYGTPLDRETFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGSFHQSPNVEKETAVYQTSGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFSSTPKREKNLKSIGMINKQRMSSSLEHAEKAANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHVDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00162 403 SUPERFAMILY ARID-like 88 200 IPR036431 GO:0003677
Cca07g00162 403 ProSiteProfiles ARID domain profile. 103 194 IPR001606 GO:0003677
Cca07g00162 403 MobiDBLite consensus disorder prediction 7 47 - -
Cca07g00162 403 CDD ARID 105 190 - -
Cca07g00162 403 CDD ACD_sHsps_p23-like 318 397 - -
Cca07g00162 403 MobiDBLite consensus disorder prediction 1 47 - -
Cca07g00162 403 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 17 400 - -
Cca07g00162 403 SUPERFAMILY HSP20-like chaperones 311 398 IPR008978 -
Cca07g00162 403 SMART bright_3 104 195 IPR001606 GO:0003677
Cca07g00162 403 Gene3D - 104 201 IPR036431 GO:0003677
Cca07g00162 403 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 17 400 IPR045147 GO:0006357
Cca07g00162 403 Gene3D - 295 402 IPR008978 -
Cca07g00162 403 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 302 403 IPR002068 -
Cca07g00162 403 SMART ARID_2 100 190 - -
Cca07g00162 403 Pfam ARID/BRIGHT DNA binding domain 106 190 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00162 Cca-Chr7 2067325 2076717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00162 24 400 ARID Transcription Factor Family AT1G76510 63.061 8.93e-160 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca07g00162 ARID 5.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00162 - - gmx:100797486 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00162 07 2067325 2076717 Cca07g00162 07 2067325 2076717 ECH