Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00160 ATGGCTGAGGGTAAAGTAGCAACAGCTCAGAAATCTCTTCAGGATTTTGATCCTCAAAAGAGCCCCAAAAGGAACAAGTATGCTTTCGCTTGTGCCATTTTGGCTTCCATGACTTCCATATTACTTGGCTATGATATTGGGGTGATGAGTGGAGCGGTTATATATATAAAGAGAGACCTGAAATTGACGGACGTGCAAATTGAGATCCTGGTAGGGATCATAAACCTTTACTCTCTCATAGGTTCGTGCCTCGCCGGAAGAACCTCCGACTGGATCGGACGCCGTTACACCATCGTCCTCGCCGGAAGCATCTTCTTCACGGGAGCCATCCTCATGGGATTCTCTCCAAACTATGCCTTTCTGATGTTCGCGCGCTTCATCGCCGGCGTCGGCATCGGCTACGCCCTCATGATTGCACCCGTCTACACCACCGAAGTCTCACCCCCTTCCTGTCGTGGCTTCCTCACCTCCTTCCCCGAGGTATTCATCAATGGAGGGATATTACTAGGATACATATCAAACTACGGATTTTCGAAGCTACCACTTCACCTGGGATGGAGGATGATGCTGGGAGTGGGCGCGCTTCCATCGGTGATCCTCGCAGTCGGAGTCTTAGCCATGCCGGAGTCCCCGCGGTGGCTGGTCATGCGTGGCCGCCTCGGAGAAGCCACGAAAGTGCTCAACAAAACCTCCGACTCCCTCGAAGAGGCCCAGCTCCGGCTAGCCGACATAAAAGCCGCGGCCGGGATCCCGGAGTCCTGCAGCGACGACGTCGTTGAGGTGACCAAACAAAGCCACGGCGAGGGCGTGTGGAAGGAGTTCTTCCTCTACCCTACGCCGGCGGTGCGGCACATCCTGATCGCCGCCCTCGGCATCCACTTCTTCCAGCAGGCTTCGGGAATCGACGCCGTCGTTTTGTACAGCCCGGAGATCTTCAAGAAGGCCGGCCTGGAATCCGACGCGGAGCAGCTCCTGGCGACGGTGGCCGTTGGGTTCGCCAAAACGGTTTTCATCTTAGTGGCGACGTTTCTGCTGGACCGGGTGGGGCGTCGGCCGCTTTTGCTGACCAGTGTTGGCGGAATGGTGTTGTCGCTCCTGGCGCTGGGCCTGGGCCTGACCGTGATTGAGCAGTCGCGCGTGGTGCTAAAGTGGGCCGTTGGGCTGAGCATAGGGACTGTTTTGTCGTACGTGGCGACTTTCTCGATTGGGGCGGGGCCCATCGCGTGGGTGTACAGCTCGGAGATATTTCCGTTGAGGCTACGCGCGCAGGGTGCGGCGATGGGAGTTGTGGTGAATAGGGTGACGAGTGGGGTGATTTCGATGACTTTCTTGTCGCTCTCTGATAAGATTACCATTGGTGGGGCCTTCTTTCTCTTTGGGGGAATCGCTGCCTGTGGCTGGATCTTCTTCTATACCATGCTCCCCGAAACACAGGGCAAGACCCTTGAGGAGATGGAAGGCTCTTTTGGTAAATTCGCAGCCTGGTCCAAGTCCAACCACAAGGACAATCCCCAAATccaattagccaattag 1533 0.5558 MAEGKVATAQKSLQDFDPQKSPKRNKYAFACAILASMTSILLGYDIGVMSGAVIYIKRDLKLTDVQIEILVGIINLYSLIGSCLAGRTSDWIGRRYTIVLAGSIFFTGAILMGFSPNYAFLMFARFIAGVGIGYALMIAPVYTTEVSPPSCRGFLTSFPEVFINGGILLGYISNYGFSKLPLHLGWRMMLGVGALPSVILAVGVLAMPESPRWLVMRGRLGEATKVLNKTSDSLEEAQLRLADIKAAAGIPESCSDDVVEVTKQSHGEGVWKEFFLYPTPAVRHILIAALGIHFFQQASGIDAVVLYSPEIFKKAGLESDAEQLLATVAVGFAKTVFILVATFLLDRVGRRPLLLTSVGGMVLSLLALGLGLTVIEQSRVVLKWAVGLSIGTVLSYVATFSIGAGPIAWVYSSEIFPLRLRAQGAAMGVVVNRVTSGVISMTFLSLSDKITIGGAFFLFGGIAACGWIFFYTMLPETQGKTLEEMEGSFGKFAAWSKSNHKDNPQIQLAN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00160 510 SUPERFAMILY MFS general substrate transporter 17 486 IPR036259 -
Cca07g00160 510 ProSiteProfiles Major facilitator superfamily (MFS) profile. 31 478 IPR020846 GO:0022857
Cca07g00160 510 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 14 502 IPR045262 GO:0015144
Cca07g00160 510 Coils Coil 227 247 - -
Cca07g00160 510 Gene3D MFS general substrate transporter like domains 21 492 IPR036259 -
Cca07g00160 510 PANTHER SUGAR TRANSPORTER 14 502 - -
Cca07g00160 510 TIGRFAM SP: MFS transporter, sugar porter (SP) family 18 485 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca07g00160 510 CDD MFS_PLT 34 485 IPR044776 GO:0005351
Cca07g00160 510 Pfam Sugar (and other) transporter 31 487 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca07g00160 510 ProSitePatterns Sugar transport proteins signature 1. 85 102 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca07g00160 510 MobiDBLite consensus disorder prediction 1 22 - -
Cca07g00160 510 ProSitePatterns Sugar transport proteins signature 2. 127 152 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca07g00160 510 PRINTS Sugar transporter signature 39 49 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca07g00160 510 PRINTS Sugar transporter signature 122 141 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca07g00160 510 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca07g00160 510 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca07g00160 510 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00160 Cca-Chr7 2031090 2033998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00160 18 510 Organic Solute Cotransporters AT3G18830 74.395 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00160 - - gmx:102670364 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00160 07 2031090 2033998 Cca07g00160 07 2031090 2033998 ECH
Cca04g00456 04 4508308 4510540 Cca07g00160 07 2031090 2033998 ECH