Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00149 ATGTCCTCTTTGGATTTTATACTCATGGAGCCAGCAGAAGTTCCAGGGATTAGTGGTGGAAAGTGGACTGATCAGGAGACCCTCTTGCTCCTTGAAGCCCTAGAACTTTATAAAGAAAACTGGAATGAAATTGCAGAACACGTTGCAACAAAATCAAAAGCTCAATGCATATTACACTTTGTTCAAATGCCAATTGAGGATGCCTTTGTTGATTGTGGTGATGATGTTGATGCAAGTTTCAAAGAAAATATAGATCCAGCTACTTCTAACAATGATTCATCTGTCCACAAAGATGCTTTACAATTTTATGAGAATAAGATTAGTGATAGCATTGAAGACCAAGTGCCAACTCTACAAAATGACTCTGCTAATGCCGATAATGTGAATAAAATGAAAGTTAATCATGAGACTACTCCAAAGCCAGGCAATGTTAATGATGTGAAAACTTGTGAACAAACTTCTAAATCAGAAGATGATGCTAAATTAAAATTTGGTCAGGAAGCAGGCAGTGACTCTGCTCTAAATGCTCTTGAGGAAGCATTTACATCTATCGGTTATTCTCCTGGCCCCAAAGGACCATCATCATTTTCTGAAGTGGGTAATCCTGTCATGGCACTGTCTCCCATTTTTTCCGCCATATGCAATCACTCTAGTGGATTAGCATCACATTTCTTTCTACAGACAGTTTTCCTTGCACGCTTGGTGGGTTCTGATATGGCTGTAGCTTCAGCTCATAGCTCCTTAAAGTCCATGTCTGTTAATTCTCCTGGCACTGTGCTTTCTGCAAGGCATTGCTTTCTTCTGGAAAATCCACTCGATGATAAGGAACCAACTATATCTGAGAGGGATTCTATGAGAGAGGGAAACGAGGATGACAGAAAACCGGAAAAATTAATGTTAGATGATAATGCTTTATCAAATGATCACAATGACAAGAAACATAAAGATAATGCTTTAGAAGTTAACCGACAGTTGGGTTCTCAAGATGATGGTGTATTGGATAAATCAATTGTTTTAAAGGAGCAAGCAATGATTGATCATGAGGAGGTTGCACATAATAATTGTAAGGATCCTGGCAATTTAAAGTTTCCCAGTGATTTAGCATCAAGTAATGGGCATGATTCAAATGGTTCTACACTCAAGGATAAAGTTTCACCCAGTTCCAATTTAAGAGAGGGAACTTCACTCACAGAGAGTTGCCAGCCAATGGAAGAACTAAAGGATGGACACGTGTCTAATGCTCCTCCTGCAGAAAATAAACTTCAACAGTCAATTAAATCCAATCTATCTGAAACGCATCTACAGCCTGTAGAGACACCAAAAGATGTTGACGCTGTGTCTGATTTTATGCCCTCAGATAAGAGCAAGTCTAAAAAACTGCTATGTACCAATCCAGTTGTCGAGTCTCTTGATCCAACAATTTCAGAAAAGGATGTTGATTTGATTTCTAATTCCTTGCCACTGGAGAAGAACGGATCTCAGTCACAAGTTACATCAATTTCATCCCAACACACTGTGGCAGAAAAGGATGTAGATATGATGTCTTCTTCTATGCCTTTGGATAAGAATGAACTTCCACATCGAGTTAAATCAAATTCTGGGGCTGAAAATGGTTATAGCTCAGTAGCAGGTGGAGATCGCACTGAAAATGGCACAAAAGTGAAAGATGATGGTAAGAAGGAAAAACATGATAACAGTTTTGAGAAATTAAAAAAGGCTGCAGTTTCTACACTTGCTGCGGCAGTTGTAAAGGCAAAAATTCTAGCTGAACAGGAAGAAGATCAAATTAGACAACTTGCTTCTTTGTTGATAGAAAAGCAGTTGCATAAATTGGAGACCAAGTTGGCTTTTTTCCATGATATGGAGAATGTTGTGATGAGGGTAAGAGAGTATTTGGTCCAGTCAAGGCAGAAGCTTTACCATGAGCGGGCTTTGATAATTGCATCCCGGCTTGGTTTACCTGCTTCCTCATCTAAAGGTGTACCGCCGAACTTACCAATCAATAGAAGTGCTATGAATTTGGCAAATTCAGTCCCAAAACCTCAAATCATCATGAATCCCCAAAGGCCACCAATTTCAGGGCCTGTGGGCACTATAGCTGCTATTCCAAACCATTTAGCATCTGCAGCAACTGTGGGAAATTCAGCTCAGCCATCCAGCCAGGAAAGCCTTTCTTCTGTTGGGATAAAGTAA 2193 0.3972 MSSLDFILMEPAEVPGISGGKWTDQETLLLLEALELYKENWNEIAEHVATKSKAQCILHFVQMPIEDAFVDCGDDVDASFKENIDPATSNNDSSVHKDALQFYENKISDSIEDQVPTLQNDSANADNVNKMKVNHETTPKPGNVNDVKTCEQTSKSEDDAKLKFGQEAGSDSALNALEEAFTSIGYSPGPKGPSSFSEVGNPVMALSPIFSAICNHSSGLASHFFLQTVFLARLVGSDMAVASAHSSLKSMSVNSPGTVLSARHCFLLENPLDDKEPTISERDSMREGNEDDRKPEKLMLDDNALSNDHNDKKHKDNALEVNRQLGSQDDGVLDKSIVLKEQAMIDHEEVAHNNCKDPGNLKFPSDLASSNGHDSNGSTLKDKVSPSSNLREGTSLTESCQPMEELKDGHVSNAPPAENKLQQSIKSNLSETHLQPVETPKDVDAVSDFMPSDKSKSKKLLCTNPVVESLDPTISEKDVDLISNSLPLEKNGSQSQVTSISSQHTVAEKDVDMMSSSMPLDKNELPHRVKSNSGAENGYSSVAGGDRTENGTKVKDDGKKEKHDNSFEKLKKAAVSTLAAAVVKAKILAEQEEDQIRQLASLLIEKQLHKLETKLAFFHDMENVVMRVREYLVQSRQKLYHERALIIASRLGLPASSSKGVPPNLPINRSAMNLANSVPKPQIIMNPQRPPISGPVGTIAAIPNHLASAATVGNSAQPSSQESLSSVGIK 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00149 730 MobiDBLite consensus disorder prediction 516 565 - -
Cca07g00149 730 SMART sant 18 66 IPR001005 -
Cca07g00149 730 MobiDBLite consensus disorder prediction 430 456 - -
Cca07g00149 730 MobiDBLite consensus disorder prediction 272 297 - -
Cca07g00149 730 MobiDBLite consensus disorder prediction 486 505 - -
Cca07g00149 730 CDD SANT 38 63 IPR001005 -
Cca07g00149 730 MobiDBLite consensus disorder prediction 134 159 - -
Cca07g00149 730 MobiDBLite consensus disorder prediction 364 399 - -
Cca07g00149 730 Pfam Myb-like DNA-binding domain 20 62 IPR001005 -
Cca07g00149 730 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 1 212 - -
Cca07g00149 730 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 229 690 - -
Cca07g00149 730 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 56 IPR017930 -
Cca07g00149 730 MobiDBLite consensus disorder prediction 533 547 - -
Cca07g00149 730 MobiDBLite consensus disorder prediction 549 565 - -
Cca07g00149 730 SUPERFAMILY Homeodomain-like 16 69 IPR009057 -
Cca07g00149 730 MobiDBLite consensus disorder prediction 351 399 - -
Cca07g00149 730 Pfam SWIRM-associated region 1 577 653 IPR032451 -
Cca07g00149 730 ProSiteProfiles Myb-like domain profile. 14 64 IPR001005 -
Cca07g00149 730 MobiDBLite consensus disorder prediction 134 150 - -
Cca07g00149 730 ProSiteProfiles SANT domain profile. 17 68 IPR017884 -
Cca07g00149 730 PANTHER SWI/SNF COMPLEX-RELATED 1 212 - -
Cca07g00149 730 PANTHER SWI/SNF COMPLEX-RELATED 229 690 - -
Cca07g00149 730 Gene3D - 18 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00149 Cca-Chr7 1859366 1867485 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca07g00149 SWIRM-assoc_1 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00149 K11649 - gmx:100786881 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00149 07 1859366 1867485 Cca07g00149 07 1859366 1867485 ECH