Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca07g00149 | ATGTCCTCTTTGGATTTTATACTCATGGAGCCAGCAGAAGTTCCAGGGATTAGTGGTGGAAAGTGGACTGATCAGGAGACCCTCTTGCTCCTTGAAGCCCTAGAACTTTATAAAGAAAACTGGAATGAAATTGCAGAACACGTTGCAACAAAATCAAAAGCTCAATGCATATTACACTTTGTTCAAATGCCAATTGAGGATGCCTTTGTTGATTGTGGTGATGATGTTGATGCAAGTTTCAAAGAAAATATAGATCCAGCTACTTCTAACAATGATTCATCTGTCCACAAAGATGCTTTACAATTTTATGAGAATAAGATTAGTGATAGCATTGAAGACCAAGTGCCAACTCTACAAAATGACTCTGCTAATGCCGATAATGTGAATAAAATGAAAGTTAATCATGAGACTACTCCAAAGCCAGGCAATGTTAATGATGTGAAAACTTGTGAACAAACTTCTAAATCAGAAGATGATGCTAAATTAAAATTTGGTCAGGAAGCAGGCAGTGACTCTGCTCTAAATGCTCTTGAGGAAGCATTTACATCTATCGGTTATTCTCCTGGCCCCAAAGGACCATCATCATTTTCTGAAGTGGGTAATCCTGTCATGGCACTGTCTCCCATTTTTTCCGCCATATGCAATCACTCTAGTGGATTAGCATCACATTTCTTTCTACAGACAGTTTTCCTTGCACGCTTGGTGGGTTCTGATATGGCTGTAGCTTCAGCTCATAGCTCCTTAAAGTCCATGTCTGTTAATTCTCCTGGCACTGTGCTTTCTGCAAGGCATTGCTTTCTTCTGGAAAATCCACTCGATGATAAGGAACCAACTATATCTGAGAGGGATTCTATGAGAGAGGGAAACGAGGATGACAGAAAACCGGAAAAATTAATGTTAGATGATAATGCTTTATCAAATGATCACAATGACAAGAAACATAAAGATAATGCTTTAGAAGTTAACCGACAGTTGGGTTCTCAAGATGATGGTGTATTGGATAAATCAATTGTTTTAAAGGAGCAAGCAATGATTGATCATGAGGAGGTTGCACATAATAATTGTAAGGATCCTGGCAATTTAAAGTTTCCCAGTGATTTAGCATCAAGTAATGGGCATGATTCAAATGGTTCTACACTCAAGGATAAAGTTTCACCCAGTTCCAATTTAAGAGAGGGAACTTCACTCACAGAGAGTTGCCAGCCAATGGAAGAACTAAAGGATGGACACGTGTCTAATGCTCCTCCTGCAGAAAATAAACTTCAACAGTCAATTAAATCCAATCTATCTGAAACGCATCTACAGCCTGTAGAGACACCAAAAGATGTTGACGCTGTGTCTGATTTTATGCCCTCAGATAAGAGCAAGTCTAAAAAACTGCTATGTACCAATCCAGTTGTCGAGTCTCTTGATCCAACAATTTCAGAAAAGGATGTTGATTTGATTTCTAATTCCTTGCCACTGGAGAAGAACGGATCTCAGTCACAAGTTACATCAATTTCATCCCAACACACTGTGGCAGAAAAGGATGTAGATATGATGTCTTCTTCTATGCCTTTGGATAAGAATGAACTTCCACATCGAGTTAAATCAAATTCTGGGGCTGAAAATGGTTATAGCTCAGTAGCAGGTGGAGATCGCACTGAAAATGGCACAAAAGTGAAAGATGATGGTAAGAAGGAAAAACATGATAACAGTTTTGAGAAATTAAAAAAGGCTGCAGTTTCTACACTTGCTGCGGCAGTTGTAAAGGCAAAAATTCTAGCTGAACAGGAAGAAGATCAAATTAGACAACTTGCTTCTTTGTTGATAGAAAAGCAGTTGCATAAATTGGAGACCAAGTTGGCTTTTTTCCATGATATGGAGAATGTTGTGATGAGGGTAAGAGAGTATTTGGTCCAGTCAAGGCAGAAGCTTTACCATGAGCGGGCTTTGATAATTGCATCCCGGCTTGGTTTACCTGCTTCCTCATCTAAAGGTGTACCGCCGAACTTACCAATCAATAGAAGTGCTATGAATTTGGCAAATTCAGTCCCAAAACCTCAAATCATCATGAATCCCCAAAGGCCACCAATTTCAGGGCCTGTGGGCACTATAGCTGCTATTCCAAACCATTTAGCATCTGCAGCAACTGTGGGAAATTCAGCTCAGCCATCCAGCCAGGAAAGCCTTTCTTCTGTTGGGATAAAGTAA | 2193 | 0.3972 | MSSLDFILMEPAEVPGISGGKWTDQETLLLLEALELYKENWNEIAEHVATKSKAQCILHFVQMPIEDAFVDCGDDVDASFKENIDPATSNNDSSVHKDALQFYENKISDSIEDQVPTLQNDSANADNVNKMKVNHETTPKPGNVNDVKTCEQTSKSEDDAKLKFGQEAGSDSALNALEEAFTSIGYSPGPKGPSSFSEVGNPVMALSPIFSAICNHSSGLASHFFLQTVFLARLVGSDMAVASAHSSLKSMSVNSPGTVLSARHCFLLENPLDDKEPTISERDSMREGNEDDRKPEKLMLDDNALSNDHNDKKHKDNALEVNRQLGSQDDGVLDKSIVLKEQAMIDHEEVAHNNCKDPGNLKFPSDLASSNGHDSNGSTLKDKVSPSSNLREGTSLTESCQPMEELKDGHVSNAPPAENKLQQSIKSNLSETHLQPVETPKDVDAVSDFMPSDKSKSKKLLCTNPVVESLDPTISEKDVDLISNSLPLEKNGSQSQVTSISSQHTVAEKDVDMMSSSMPLDKNELPHRVKSNSGAENGYSSVAGGDRTENGTKVKDDGKKEKHDNSFEKLKKAAVSTLAAAVVKAKILAEQEEDQIRQLASLLIEKQLHKLETKLAFFHDMENVVMRVREYLVQSRQKLYHERALIIASRLGLPASSSKGVPPNLPINRSAMNLANSVPKPQIIMNPQRPPISGPVGTIAAIPNHLASAATVGNSAQPSSQESLSSVGIK | 730 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca07g00149 | 730 | MobiDBLite | consensus disorder prediction | 516 | 565 | - | - | |
Cca07g00149 | 730 | SMART | sant | 18 | 66 | IPR001005 | - | |
Cca07g00149 | 730 | MobiDBLite | consensus disorder prediction | 430 | 456 | - | - | |
Cca07g00149 | 730 | MobiDBLite | consensus disorder prediction | 272 | 297 | - | - | |
Cca07g00149 | 730 | MobiDBLite | consensus disorder prediction | 486 | 505 | - | - | |
Cca07g00149 | 730 | CDD | SANT | 38 | 63 | IPR001005 | - | |
Cca07g00149 | 730 | MobiDBLite | consensus disorder prediction | 134 | 159 | - | - | |
Cca07g00149 | 730 | MobiDBLite | consensus disorder prediction | 364 | 399 | - | - | |
Cca07g00149 | 730 | Pfam | Myb-like DNA-binding domain | 20 | 62 | IPR001005 | - | |
Cca07g00149 | 730 | PANTHER | SWI/SNF COMPLEX SUBUNIT SWI3D | 1 | 212 | - | - | |
Cca07g00149 | 730 | PANTHER | SWI/SNF COMPLEX SUBUNIT SWI3D | 229 | 690 | - | - | |
Cca07g00149 | 730 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 15 | 56 | IPR017930 | - | |
Cca07g00149 | 730 | MobiDBLite | consensus disorder prediction | 533 | 547 | - | - | |
Cca07g00149 | 730 | MobiDBLite | consensus disorder prediction | 549 | 565 | - | - | |
Cca07g00149 | 730 | SUPERFAMILY | Homeodomain-like | 16 | 69 | IPR009057 | - | |
Cca07g00149 | 730 | MobiDBLite | consensus disorder prediction | 351 | 399 | - | - | |
Cca07g00149 | 730 | Pfam | SWIRM-associated region 1 | 577 | 653 | IPR032451 | - | |
Cca07g00149 | 730 | ProSiteProfiles | Myb-like domain profile. | 14 | 64 | IPR001005 | - | |
Cca07g00149 | 730 | MobiDBLite | consensus disorder prediction | 134 | 150 | - | - | |
Cca07g00149 | 730 | ProSiteProfiles | SANT domain profile. | 17 | 68 | IPR017884 | - | |
Cca07g00149 | 730 | PANTHER | SWI/SNF COMPLEX-RELATED | 1 | 212 | - | - | |
Cca07g00149 | 730 | PANTHER | SWI/SNF COMPLEX-RELATED | 229 | 690 | - | - | |
Cca07g00149 | 730 | Gene3D | - | 18 | 68 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca07g00149 | Cca-Chr7 | 1859366 | 1867485 | Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Cca07g00149 | SWIRM-assoc_1 | 1.2e-21 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca07g00149 | K11649 | - | gmx:100786881 | 720.309 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca07g00149 | 07 | 1859366 | 1867485 | Cca07g00149 | 07 | 1859366 | 1867485 | ECH |