Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00148 ATGGCTTCAGATTCCGATAAGGATTCCCCAACACCACCTCCACCCAATTCATCTTCTTCGCATtcccctcctccacccccaccccctcctccatcgtcgcctccgccgccCAGCGGTGACAAGAAGTCTCCTCCACCGCCTCCGGAGAAGGAGTCAGGAAGCCACCACCCCCCGCCGCCCCCACACAACCGTGAGTTTTCTTCTCCTCCGCCTCCACACCACCGGTTGTCTCCACCCAAGTCACACACGCATGCATCCGGAGAGAGTGGAGGTGGAGGCCATTCATCGAACTTACCATTTATAATAGGAGTTGTAGCTGGAGTTGGGATTTTGCTCCTCCTCCTTTTCATCATCATCTTTTCGTGTTCAAGAAGGAAGAAGAGACCTCAGACTTCCGTTTACTACGCCAATCAACCCGCCGATGATGGGTATTATAAACGTCCTGCAGCAGGAGGAGGTCCAAACCAGTATGGGGGGGTGAATAAGGGTGAGCACGTTCTTAACATTCCTCCGCCACCAGGAGCAGGTTGGGGAGCAGCACGAATCAGTAGTGACGTGAGCAACTCCAGTTACTCAGGTCCTGTGCTGCCACCCCCACACCCCACACTGGCACTTGGATTCAACCAAAGCTCCTTCACTTACGACGAGCTCTCTGCTGCCACCGCTGGCTTCTCCCAACGCAACCTCCtcggccagggtggcttcggatatgtccacaaaggctttctccccaatggcaaggaaattgctgtcaagagcctcaaatccaccggaggccaaggagacagagagttccaagctgaggttgacattatcagccgtgtccaccatcgccacctcgtctcacttgtcggctattgcttgtctgaagccaaaaagcttctcgtctatgagtttgtgcctaacaagacccttgaataccacctTCATGGAAAGGGTCGACCTGTCAtggattggggtaccaggctcaaaattgcgattggatccgccaaaggacttgcttatttacacgaggattGTCACCCTCGTATCATTCACCGAGACATAAAGGGTGCAAACATTCTACTTGAAAACAACTTCGATGCCAAAGTGGCAGATTTTGGGTTGGCAAAGTTTAGTCAGGACACCAACACTCATGTTTCTACTCGTGTAATGGGAACATTCGGgtatatggctcctgagtatgcatcaagtggtaagctaactgacaaatctgacgtcttctccttcggtattatgcttttggagCTCATAACAGGTCGTCGGCCGGTGGATCACACCGGGGAAGATGAAGATACTTTGGTTGACTGGGCTAGACCACTTTGTACAAAGGCAATGGAAAATGGAAGTTTTGAAGGACTAGTGGATCCACGTTTAGAGGGTAAATATAACAAGTTCCAAATGGCTTCTATGGTGTCTTGTGCTGCTGCTTGCATTAGGCACTCAGCAAAGAGTCGCCCAAGAATGAGTCAGATTGTACGAGTACTGGAGGGTGATGTGACAGTAGATGTCCTTAATCTAGATGGGGTGAAAGCTGGGCCAAATGCAGTCCGGAGCAGCACAAGCGGCGAGTATGATGGGGACTTATACGGTGCTAACATGATGAAGTACAGGAAGAAACCAGCAGCAGATAGCAGCATGGTTAGCAGTGAGTATGGTGCAACCAGTGAATATGGCCTTAACCCTTCCGTCTCAAGCAGTGACCAATCTACTGAATATGCCAACAAGCCATGGAGAAATTATTAA 1746 0.3769 MASDSDKDSPTPPPPNSSSSHSPPPPPPPPPSSPPPPSGDKKSPPPPPEKESGSHHPPPPPHNREFSSPPPPHHRLSPPKSHTHASGESGGGGHSSNLPFIIGVVAGVGILLLLLFIIIFSCSRRKKRPQTSVYYANQPADDGYYKRPAAGGGPNQYGGVNKGEHVLNIPPPPGAGWGAARISSDVSNSSYSGPVLPPPHPTLALGFNQSSFTYDELSAATAGFSQRNLLGQGGFGYVHKGFLPNGKEIAVKSLKSTGGQGDREFQAEVDIISRVHHRHLVSLVGYCLSEAKKLLVYEFVPNKTLEYHLHGKGRPVMDWGTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFDAKVADFGLAKFSQDTNTHVSTRVMGTFGYMAPEYASSGKLTDKSDVFSFGIMLLELITGRRPVDHTGEDEDTLVDWARPLCTKAMENGSFEGLVDPRLEGKYNKFQMASMVSCAAACIRHSAKSRPRMSQIVRVLEGDVTVDVLNLDGVKAGPNAVRSSTSGEYDGDLYGANMMKYRKKPAADSSMVSSEYGATSEYGLNPSVSSSDQSTEYANKPWRNY 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00148 581 ProSitePatterns Protein kinases ATP-binding region signature. 230 252 IPR017441 GO:0005524
Cca07g00148 581 Pfam Protein tyrosine and serine/threonine kinase 227 496 IPR001245 GO:0004672|GO:0006468
Cca07g00148 581 MobiDBLite consensus disorder prediction 1 92 - -
Cca07g00148 581 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 7 550 - -
Cca07g00148 581 MobiDBLite consensus disorder prediction 557 581 - -
Cca07g00148 581 MobiDBLite consensus disorder prediction 50 76 - -
Cca07g00148 581 Gene3D Phosphorylase Kinase; domain 1 201 299 - -
Cca07g00148 581 ProSiteProfiles Protein kinase domain profile. 224 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00148 581 SMART serkin_6 224 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00148 581 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 7 550 - -
Cca07g00148 581 Gene3D Transferase(Phosphotransferase) domain 1 300 505 - -
Cca07g00148 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Cca07g00148 581 SUPERFAMILY Protein kinase-like (PK-like) 204 496 IPR011009 -
Cca07g00148 581 MobiDBLite consensus disorder prediction 8 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00148 Cca-Chr7 1854858 1858142 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00148 89 563 Trihelix Transcription Factor Family AT1G70460 50.000 3.09e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Cca07g00148 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00148 - - gmx:100806299 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00148 07 1854858 1858142 Cca07g00148 07 1854858 1858142 ECH