Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00144 ATGAAAGTTGAAGCCTCACTTTTCCCAATATTCTCGCTTCTTTTCTTCTTTAATTATTTCATCTCATTTTTCAATTCTCAAGCAAAGCAAAGCAAacacttcatttcatttcatcacattcacatttacattCTCGCGATGGCAGCATCCGCCACCTCCTCCGGCGGCGCGCTGCCGGAGCTAGCCAACCGAACCCCCTTTCTCGGCCTCAAGCTCTACGTCTTGTTCCTCATTCTAGCTCTCATGGTGGCCGCCGCGGTGGTCCTGATCCTCCTCTGCGTTCGCCGGAGCCGGAGCTCGAAGAAACACAAAATGCGTGTGAAGCACAGCTCCGGCGCGATCCCACTGGTCTCCAAGGAGATCGTGGAGGTGAATACTCTGGACCTGAAAATCGAAGAGGAGGATCCGAAGAAGAACGTTGAGATTGAAGAAAGTGCGTCGGTGGAATCGCCCAACATAGGGTGGGGACGCTGGTATACCCTCGACGAGCTTCACACCGCCACTCAAGGCTTTGCAGAAGAGAATGTCATCGGAGAAGGAGGCTATGGGATTGTCTTCAAAGGACTTCTCCTCGACGGTTCTGTCGTCGCTGTCAAAAATCTTCTCAACAACAAGGGTCAGGCAGAGAAAGAGTTTAAGGTGGAGGTTGAAGCAATTGGAAAAGTGAGGCATAAGAATTTGGTGGGGTTAGTTGGATATTGTGCAGAAGGTGCTCAAAGGATGCTTGTTTATGAATACGTTGACAATGGAACACTGGAGCAGTGGCTGCATGGTGATGTAGGACCTGTTAGCCCCTTGACATGGGATATACGAATGAAGATTGCTGTTGGGACTGCGAAAGGGCTAGCATATTTGCACGAAGGCTTGGAACCGAAAGTTGTTCACCGAGATGTAAAATCCAGTAACATTCTTTTGGACAAAATGTGGAATGCTAAAGTATCCGACTTTGGACTGGCCAAACTCTTGGGGTCTGAGAAAAGCTATGTGACAACGCGTGTAATGGGGACATTTGGATATGTTTCACCTGAGTATGCAAGCACGGGTATGCTTAATGAGGGAAGCGATGTGTATAGTTTCGGGATTCTACTTATGGAGCTAATTACAGGAAGAAGTCCCATTGATTATTCTAGACCACCCGGAGAGATGAACTTGGTTGATTGGTTTAAGGGAATGGTAGCAAGTCGTCGTGGTGAAGATCTAGTTGATCCTTTAATTGAGATTCAGCCCTCTCCAAGATCTTTGAAGAGAGCTTTACTAGTTTGTCTGCGCTGTATAGACTTGGATGTCAGTAAGCGACCAAAGATGGGTCAAATTGTTCACATGCTTGAGGCTGATGATTTTCCCTTTCGCTCTGAGCATCGAACAAATCGAGAGAAAGAGCATGTTCATTCTAAAGCAGCTGCTTCCATTAAGATTCCATATCCAACAAGGCATGTGGAACCTCTAGATAAATCAAGCTGGAGATGA 1467 0.4594 MKVEASLFPIFSLLFFFNYFISFFNSQAKQSKHFISFHHIHIYILAMAASATSSGGALPELANRTPFLGLKLYVLFLILALMVAAAVVLILLCVRRSRSSKKHKMRVKHSSGAIPLVSKEIVEVNTLDLKIEEEDPKKNVEIEESASVESPNIGWGRWYTLDELHTATQGFAEENVIGEGGYGIVFKGLLLDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGAQRMLVYEYVDNGTLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKMWNAKVSDFGLAKLLGSEKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMELITGRSPIDYSRPPGEMNLVDWFKGMVASRRGEDLVDPLIEIQPSPRSLKRALLVCLRCIDLDVSKRPKMGQIVHMLEADDFPFRSEHRTNREKEHVHSKAAASIKIPYPTRHVEPLDKSSWR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00144 488 Gene3D Phosphorylase Kinase; domain 1 130 246 - -
Cca07g00144 488 SMART serkin_6 171 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00144 488 ProSiteProfiles Protein kinase domain profile. 171 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00144 488 CDD STKc_IRAK 177 443 - -
Cca07g00144 488 Gene3D Transferase(Phosphotransferase) domain 1 247 461 - -
Cca07g00144 488 SUPERFAMILY Protein kinase-like (PK-like) 151 443 IPR011009 -
Cca07g00144 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Cca07g00144 488 ProSitePatterns Protein kinases ATP-binding region signature. 177 199 IPR017441 GO:0005524
Cca07g00144 488 Pfam Protein kinase domain 172 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00144 488 PANTHER OS03G0227900 PROTEIN 61 142 - -
Cca07g00144 488 PANTHER OS03G0227900 PROTEIN 144 460 - -
Cca07g00144 488 PANTHER OS01G0323000 PROTEIN 61 142 - -
Cca07g00144 488 PANTHER OS01G0323000 PROTEIN 144 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00144 Cca-Chr7 1818786 1822609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00144 71 443 Receptor kinase-like Gene Family AT4G02010 41.270 4.28e-91 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Cca07g00144 Pkinase 5.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00144 - - gmx:100779420 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00144 07 1818786 1822609 Cca07g00144 07 1818786 1822609 ECH
Cca04g00445 04 4399536 4403275 Cca07g00144 07 1818786 1822609 ECH