Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00143 ATGGGCATAGTGTGGTTTGGGTTCTTGTTGCTGTTGCTGAGTCAGGTGACATTGGAGCAGATTGAGCCACTGAGTTCCCCTAAGGAGCGAGAATCGTTGCTCCAACTAAGGGCTTCTCTGGGGTTGAGGAGCAAGGAGTGGCCAAGAAAGCCAGACCCTTGTTTAATCTGGCTTGGAATCACATGCCAGAATGGTAGAGTCGTTGGGATCAATATCTCTGGGTTTAGAAGAACACGAATTGGGAGGAGAAAGCCGGAGTTTGCAGTGGATGCCTTGGCCAATTTCACTCTTTTGGAGTCCTTCAATGCCTCCAATTTCCTCCTTCCAGGGCCTATTCCTGATTGGTTTGGTATCTCCCTTGTTTCCCTCAGAGTGCTTGATCTTCGTTCTTGCTCCATTGTTAGTTCTATTCCTTCCTCTCTTGGCAATTTAACCAACCTCACTGCTCTCTATCTTTCCAACAACAACCTCACTGGGAACGTTCCTGAGAGTTTTGGTCAACTCTCGGCCCTTTTGGTTCTTGATCTTTCCAGGAATTCTCTTTCTGGCTTCATACCAATGGCTTTTGCCTCTCTTGGGAATCTTTCTTCCCTTGACATGTCTGCCAATTCTTTGTCGGGGCCGATTCCCACCGGTGTAGGGACTCTTTCCAGGTTGCGCTACTTGAATCTTTCCAACAATGGTCTTGCTTCTTTGCCTGCCAGATTGGGGGGTCTCACTAGCTTGGTTGACCTTGATCTTAGTGAGAATTCTTTCTCTGGCAGCAGACTGCCTCAGGGTTTGACCGGTTTGAGGAACTTGCGCCAGCTGATTCTTGCAAACAGCATGCTCGCCGGAGTTCTGCCGGCAAGATTGTTTAATGATTCATTGCAGTTGCAGTTTGTGATGCTGAGGCAAAACAACTTTAGTGGTTCTTTGCCTGCTGAGTTGTTGTCTCTGCCAAGATTGACCTTCCTTGATGTGTCTGCAAATAACTTCACTGGTATGCTTCCTAATTTGAGTTCCTCTGCTAATGCTACCGTGGCAGAGCTCAATGTTTCTCATAATAAGTTCTATGGAGGCCTTACTCCTGCGCTCAGAAGGTTTGGTTTTGTTGATCTTTCAAACAATTATTTTGAGGGCAAGGTTCTGGATTTTATGGGCAACGTATCTGTAAGTAGCAACTGCCTCCAGAACGCGACAAATCAGCGGTCAACTGAGGAATGTGCATCATTTTATGCGGAGAGGGGGCTCAGTTTTGACAATTTTGGACGCCCAAATACAACAAAACCGTCTGCGTCGTCAAAAGATTCTGGGATGAGCAATAAAACTAAGATTATATTGGCTGCAGTCTTGGGTGGAGTGGGTTTAATTGCTATTTTGGTGTTGCTACTGGTACTGTTGCTTCTGTGTGCTCGGAGGAGGGGTACTTCAAATCAAAGAGGAAATGGTGTGGGTCCTGCTCCTGTTGGCAGCAGTCCTCCAAATCCTGGCGTATCAATTGACTTTCCAAGTGTAGGAGACTCGTTTACATATCATCAGTTGCTCCAGGCAACAGAAGATTTCAATGAGGCAAATCTTATCAAACATGGCCACACCGGGGATTTCTTTAATGGTGTTTTGGAAGGTGGGGTTTCTGTCGTCATCAAAAGGATTGACATGCGAGCAGCTAAAAAGGAGGCTTACCTGTCGGAATTGGACTTTTTCAATAAGGTTTCTCATCAAAGATTTGTTCCCTTGTTAGGTCACTGCTTAGAAAATGAGAATGAGAAGTTCCTGGTTTATAAACGCATGCCAAATGGGGACTTGTCTAATAGCTTGTACTACAAAAACACTACATCTGAAGATGGTACTTTGCAATCACTGGATTGGATAACTAGGTTAAAAATTGCTACCGGAGCAGCCGAGGCCCTAACATATCTGCATCATGAATGTATTCCGCCCATTGTTCACAGAGATGTTCAAGCAAGCAGTATACTACTAGACGACAAATATGAAGTTCGGTTAGGGAGTCTAAGTGAAGCTTGTGCTCAAGAAGGCGATATTCATCAAAGTAAAATCACCCGGTTTTTGCGATTGCCTCAGTCCTCTGAACAAGGCACATCTGGTGCATTGACATCAAATTGTGCCTATGACGTTTATTGCTTTGGGAAAGTTTTGCTTGAGCTGGTGACTGGTAAGCTGGGAATGAGTGCAACCAGCGATGCCGAAGCAAAGGAATGGTTCGAACAGGTTCTACCTTGCATTAGCATGTATGACAAGGAGCCTGTGACAAAGATTGTTGATCCATCGATGGTTGTTGATGAGGATTTCTTAGAGGAAGTATGGGCTATAGCCATTGTTGCCAGGTCTTGCCTAAATCCCAAACCTTCAAGAAGACCCCCAATGAGATATATTCTCAAGGCTTTAGAAAACCCTTTAAAAGTTGTGAGGGAAGAAAGTTCCAGCTCTGCGCGGCTTAGAGCAACCTCTTCCAGAGGCTCTTGGAATGCTACTTTGTTTGGTAGTTGGCGTCAGAGCTCGTCGGATGTAACAGCAGTGCCAGCAGCCTCTGGTACAAAACTAGAAAGAGCTAGTAGTTTGAAGCTGTCGGGAACTACCGGCTCGCAGTCACAGGGTAGCCTACACAATGGTGGTGATGTTTCGTCATCGCGGAGACGGCATTCAAAGGAGATATTCCCAGAACCATCTGGCGTACATGATGTAGAGAAGTTGGAGCTGGAATAG 2706 0.4571 MGIVWFGFLLLLLSQVTLEQIEPLSSPKERESLLQLRASLGLRSKEWPRKPDPCLIWLGITCQNGRVVGINISGFRRTRIGRRKPEFAVDALANFTLLESFNASNFLLPGPIPDWFGISLVSLRVLDLRSCSIVSSIPSSLGNLTNLTALYLSNNNLTGNVPESFGQLSALLVLDLSRNSLSGFIPMAFASLGNLSSLDMSANSLSGPIPTGVGTLSRLRYLNLSNNGLASLPARLGGLTSLVDLDLSENSFSGSRLPQGLTGLRNLRQLILANSMLAGVLPARLFNDSLQLQFVMLRQNNFSGSLPAELLSLPRLTFLDVSANNFTGMLPNLSSSANATVAELNVSHNKFYGGLTPALRRFGFVDLSNNYFEGKVLDFMGNVSVSSNCLQNATNQRSTEECASFYAERGLSFDNFGRPNTTKPSASSKDSGMSNKTKIILAAVLGGVGLIAILVLLLVLLLLCARRRGTSNQRGNGVGPAPVGSSPPNPGVSIDFPSVGDSFTYHQLLQATEDFNEANLIKHGHTGDFFNGVLEGGVSVVIKRIDMRAAKKEAYLSELDFFNKVSHQRFVPLLGHCLENENEKFLVYKRMPNGDLSNSLYYKNTTSEDGTLQSLDWITRLKIATGAAEALTYLHHECIPPIVHRDVQASSILLDDKYEVRLGSLSEACAQEGDIHQSKITRFLRLPQSSEQGTSGALTSNCAYDVYCFGKVLLELVTGKLGMSATSDAEAKEWFEQVLPCISMYDKEPVTKIVDPSMVVDEDFLEEVWAIAIVARSCLNPKPSRRPPMRYILKALENPLKVVREESSSSARLRATSSRGSWNATLFGSWRQSSSDVTAVPAASGTKLERASSLKLSGTTGSQSQGSLHNGGDVSSSRRRHSKEIFPEPSGVHDVEKLELE 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00143 901 ProSiteProfiles Protein kinase domain profile. 515 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00143 901 MobiDBLite consensus disorder prediction 874 901 - -
Cca07g00143 901 SMART LRR_typ_2 120 143 IPR003591 -
Cca07g00143 901 SMART LRR_typ_2 313 336 IPR003591 -
Cca07g00143 901 SMART LRR_typ_2 264 288 IPR003591 -
Cca07g00143 901 SMART LRR_typ_2 216 238 IPR003591 -
Cca07g00143 901 SMART LRR_typ_2 144 167 IPR003591 -
Cca07g00143 901 SMART LRR_typ_2 239 263 IPR003591 -
Cca07g00143 901 SMART LRR_typ_2 168 191 IPR003591 -
Cca07g00143 901 Pfam Leucine rich repeat 145 205 IPR001611 GO:0005515
Cca07g00143 901 Gene3D Phosphorylase Kinase; domain 1 494 589 - -
Cca07g00143 901 PANTHER BNAA07G03560D PROTEIN 181 843 - -
Cca07g00143 901 PANTHER BNAA07G03560D PROTEIN 8 183 - -
Cca07g00143 901 MobiDBLite consensus disorder prediction 850 873 - -
Cca07g00143 901 SUPERFAMILY L domain-like 89 412 - -
Cca07g00143 901 ProSiteProfiles Leucine-rich repeat profile. 218 240 IPR001611 GO:0005515
Cca07g00143 901 MobiDBLite consensus disorder prediction 471 491 - -
Cca07g00143 901 PANTHER RECEPTOR-LIKE PROTEIN 55 181 843 - -
Cca07g00143 901 PANTHER RECEPTOR-LIKE PROTEIN 55 8 183 - -
Cca07g00143 901 Gene3D Transferase(Phosphotransferase) domain 1 591 818 - -
Cca07g00143 901 Pfam Leucine Rich Repeat 122 144 IPR001611 GO:0005515
Cca07g00143 901 Pfam Protein tyrosine and serine/threonine kinase 521 793 IPR001245 GO:0004672|GO:0006468
Cca07g00143 901 SUPERFAMILY Protein kinase-like (PK-like) 488 796 IPR011009 -
Cca07g00143 901 Gene3D Ribonuclease Inhibitor 188 412 IPR032675 -
Cca07g00143 901 MobiDBLite consensus disorder prediction 841 901 - -
Cca07g00143 901 Pfam Leucine Rich repeats (2 copies) 218 253 IPR025875 -
Cca07g00143 901 Gene3D Ribonuclease Inhibitor 26 187 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00143 Cca-Chr7 1786565 1792382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00143 29 688 Miscellaneous Gene Families AT2G16250 56.757 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Cca07g00143 PK_Tyr_Ser-Thr 1.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00143 - - gmx:100805769 1448.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00143 07 1786565 1792382 Cca07g00143 07 1786565 1792382 ECH