Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00142 ATGTCTTCTGCAGAAATAGAGTACCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACAACGACGCTCTCGAGAAAGCCTTCTCTCAGTATGGCGAGATCGTCGAATCGAAGGTCATCAACGATCGTGAGACTGGAAGATCCAGAGGATTTGGATTTGTCACCTTCGCCACGGAGCAGGCGATGAGAGACGCCATCGAAGGAATGAACGGCCAGAATCTTGACGGCCGGAACATCACTGTCAACGAGGCTCAGTCCCgtggaaggggaggcggtggtggaggtggctacggaggcggtggtggtggcggaggctacggcggtggcggtggatatagccgtggtggaggtggatatggtggcggtcgccgtgagggaggtggaggaggatataatcgcaacggtggtggcggaggttatggtggcggcggcggcggatatggaggtggcggtggtggttatggcggtggcagagaccgcggttatggcgatggtggatcccggtactcgagaggaggtggtggtggttcggatggtggAAGCTGGAGGAATTAG 555 0.2613 MSSAEIEYRCFVGGLAWATDNDALEKAFSQYGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGGYGGGGGGGGYGGGGGYSRGGGGYGGGRREGGGGGYNRNGGGGGYGGGGGGYGGGGGGYGGGRDRGYGDGGSRYSRGGGGGSDGGSWRN 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00142 184 MobiDBLite consensus disorder prediction 149 184 - -
Cca07g00142 184 SMART rrm1_1 9 82 IPR000504 GO:0003723
Cca07g00142 184 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Cca07g00142 184 Gene3D - 2 120 IPR012677 -
Cca07g00142 184 PANTHER GEO13361P1-RELATED 1 124 - -
Cca07g00142 184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Cca07g00142 184 SUPERFAMILY RNA-binding domain, RBD 9 118 IPR035979 GO:0003676
Cca07g00142 184 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00142 Cca-Chr7 1735425 1736639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00142 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 36.709 5.56e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00142 - K13195 gmx:100777821 166.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00142 07 1735425 1736639 Cca07g00142 07 1735425 1736639 ECH