Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00139 ATGCTCAAGCTAATAGCTATCCCTTCCCTTATGGCCTCAAGCACTTTGGGCAAACAAAAGGTTTTTGATTCTTCTTGGACCCCAAAACAGAACAAGGTGTTTGAAAAGGCACTTGCAATGCATGACAAGGATACCCCTGATCGGTGGCACAATATAGCCAAAGCAGTTGGTGGTAAATCAGCAGAGGAAGTTAAGAGACACTATGAGATACTCTTGGAGGATCTCAGGCACATAGAGTCCGGTCATGTTCCCATTCCCAATTACAGATCCCCATCAACTTCCTTTCCTCTTTGA 294 0.4456 MLKLIAIPSLMASSTLGKQKVFDSSWTPKQNKVFEKALAMHDKDTPDRWHNIAKAVGGKSAEEVKRHYEILLEDLRHIESGHVPIPNYRSPSTSFPL 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00139 97 CDD SANT 25 72 IPR001005 -
Cca07g00139 97 Pfam Myb-like DNA-binding domain 24 68 IPR001005 -
Cca07g00139 97 Gene3D - 22 85 - -
Cca07g00139 97 PANTHER PROTEIN RADIALIS-LIKE 3 11 90 - -
Cca07g00139 97 SMART sant 22 74 IPR001005 -
Cca07g00139 97 ProSiteProfiles SANT domain profile. 21 76 IPR017884 -
Cca07g00139 97 ProSiteProfiles Myb-like domain profile. 18 72 IPR001005 -
Cca07g00139 97 SUPERFAMILY Homeodomain-like 24 80 IPR009057 -
Cca07g00139 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 11 90 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00139 Cca-Chr7 1698262 1699268 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca07g00139 Myb_DNA-binding 6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00139 - - gmx:100805232 157.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00139 07 1698262 1699268 Cca07g00139 07 1698262 1699268 ECH
Cca04g00432 04 4304933 4306969 Cca07g00139 07 1698262 1699268 ECH
Cca07g00139 07 1698262 1699268 Cca04g00432 04 4304933 4306969 ECH