Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00138 ATGTTGCACTGTGCGAAGACGTCGGGGTTGGAAAGGCAGAGGGCGAGGATGAAGTGGGAAGAAGAGGAAGGGTTGTTTTGTGGGTTAAGCGGTGTTCTCTCTTCTAATTCTTCTTCGTTGCATGTTCACGAGTCCATGATGGTGGCTGCTGATTCGGGTTCTGCCCTGGCTGAGGTGGTGGCTCAGGCTGGCTCAATCAACATGCCAACTGCTGGGAGCCCCTCAATATCAAGGACCTTTAGCTGTCCACCTACTCTCGTGGAGCCCAAGCCCAAGCCCAAGCCCGCTGCCTCCTCAATTGGGATCAAGAAGCGCAAACCTCACAGTCCCAAGTTTGTTGCAGAAAATGATAGTAGCAAAGACAAGAGGATCAAAGTCGGCGCCCACGATGGAGAATCCAAAATCACAGGAACCAACAACAACAGAGAAGAAACCTGTGCGGATACTTCAAATTCCAAACAAAATTCAAAGCTCTCCGAGGTTCAAAAGCCCGATTACAttcatgttcgagcacgtcgtggccaagccaccgatagccatagcttagctgaaagaGTTAGAAGAGAAAAAATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTTCCTGGATGCAACAAAATCACGGGAAAAGCTGGCATGCTCGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGTTTCTGTCAATGAAATTAGCTGCTGTGAATCCAAGGCTTGACTTTAGTGTTGATGATCTATTTGACAAAGAGGTGTTTCCTGCTTGTGCTGCAAATTTTCCAAATATGGGAATGTCATCAGACATGACTAATTATCTACAGTTTAATTCACCACAGCAACAGCAAATTGTTTCCTATGGTGGATTAGATACGGGGATTAACCCTTCCGATATGGGGCTTAGAAGGACAATAAGTGCCCCTGTTTCAATGCCTGAAGAAACATATCTTCCCTCATCCTGTTTCACACAAATGCTACCCTTTTCAACATGGGAAGGTGGTTTCCAAAACCATTGCAATTTCGATTTCCCTTCTCAGCTCTTCTCAGGCCTAGTTGAAGCTGGCAATCTAAAGATGGAGATGTAG 1092 0.4277 MLHCAKTSGLERQRARMKWEEEEGLFCGLSGVLSSNSSSLHVHESMMVAADSGSALAEVVAQAGSINMPTAGSPSISRTFSCPPTLVEPKPKPKPAASSIGIKKRKPHSPKFVAENDSSKDKRIKVGAHDGESKITGTNNNREETCADTSNSKQNSKLSEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFSVDDLFDKEVFPACAANFPNMGMSSDMTNYLQFNSPQQQQIVSYGGLDTGINPSDMGLRRTISAPVSMPEETYLPSSCFTQMLPFSTWEGGFQNHCNFDFPSQLFSGLVEAGNLKMEM 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00138 363 MobiDBLite consensus disorder prediction 108 130 - -
Cca07g00138 363 MobiDBLite consensus disorder prediction 84 158 - -
Cca07g00138 363 MobiDBLite consensus disorder prediction 133 158 - -
Cca07g00138 363 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 68 345 IPR024097 GO:0006355
Cca07g00138 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 244 IPR036638 GO:0046983
Cca07g00138 363 SMART finulus 181 231 IPR011598 GO:0046983
Cca07g00138 363 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 68 345 - -
Cca07g00138 363 Gene3D - 172 245 IPR036638 GO:0046983
Cca07g00138 363 Pfam Helix-loop-helix DNA-binding domain 179 226 IPR011598 GO:0046983
Cca07g00138 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 225 IPR011598 GO:0046983
Cca07g00138 363 CDD bHLH_AtBPE_like 165 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00138 Cca-Chr7 1668186 1670549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00138 1 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 42.236 1.56e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca07g00138 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00138 - - ccaj:109793162 703.36