Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00125 ATGGCTCCAAAGAAGGACAAGGCTCCCCCACCATCATCGAAGCCCGCCAAATCTGGTGGTGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAATAACATGGTTCTGTTCGATCAGGGTACCTATGACAAGCTCCTCTCTGAGGCACCCAAATACAAGCTCATTACTCCTTCCATTCTCTCTGATCGTTTGAGGATTAATGGATCACTTGCAAGGAAGGCTATAAGAGAATTGATGGCTAGAGGTTCAATCAGGATGTTTGAGACATACCAGCATCAGTTTGACAGTGTTGCTAAATTCATGGTTTATTTCCTTTTACATCCTTGGATAGCACCGAGAATTGCCTTCCACATAGCAAACCTTGGCACAAGAACATGGGTTGATCAAGTACTAGAAGACAATTCCGAAGACCTTTCAAGATATTTCATATGGAGCTCCTTTTATCTTTCCTAA 471 0.4352 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMFETYQHQFDSVAKFMVYFLLHPWIAPRIAFHIANLGTRTWVDQVLEDNSEDLSRYFIWSSFYLS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00125 156 PANTHER BNAA04G12260D PROTEIN 2 97 - -
Cca07g00125 156 Pfam S25 ribosomal protein 8 95 IPR004977 -
Cca07g00125 156 Gene3D - 21 100 - -
Cca07g00125 156 MobiDBLite consensus disorder prediction 1 34 - -
Cca07g00125 156 PANTHER 40S RIBOSOMAL PROTEIN S25 2 97 IPR004977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00125 Cca-Chr7 1565932 1569575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00125 1 99 Cytoplasmic Ribosomal Protein Gene Family AT4G34555 87.879 1.68e-44 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00125 K02975 - gmx:100499810 133.265