Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00110 ATGGCAACTTACTACACAAGTTCAAGTAATCAAAGGGATGCAGTGCCTATGCTTTGTCTTAGGGAGCCTTTGCCTAATTCGTATTCCGAGACACCAATTTTGCCTAGCAGTATGACATTGTATATGAACTCTGGTTCATATTCTGAAGCATTTTCTGGCAATTCTCAGCAGCAAAGTAACTGCTTTGTGATTCCATCACCATCAGTAGGTGCTTCACATTCCACTCCTGAACAGCAGGAAATCTTGGCTAATATGGGAGGGTTCCAATCCGATATTCATGATTTGAATGCATGGAGGGAGGGTAGGAGTGAGATGTTAGTTAGACAACCTATGGATGGACAGAACTTACAAGGTCAGGGATTATTGTCTCTTAGCCTTGGAACCCACATTCAAATGCCTTCTATCCATAATAGGCATCATAGTTCAAGTTTTGATTCATTTTTGGGTACTAATCCATCAATTTCATGCAATGAGGCCTACCAAAGTGGCTCATCTAAGGATGAGGGTATGAGACATTCTGAAAACTTTCAACTTGGGTTACCTGAAGCTAGTCAAGATTTGGGCAGGGCGGATTTTTCGTTTCATGAAATGTCTAGTGTTGGAAGAACAGTTCCTAGCTCCAAATACCTCAAGGCAGTGCAACAACTGCTTGATGAAGTTGTTGACATCCGAAAAGCTATTAAAAGACCTGATATGAGAAGTCATAGCGCACTTGAGAACTCTAAGAAGAACTCTAAGGAGGGTGATGAGCAACTAGAAAATGAAAGGCCTTCTGCAAATGGAGTGCCTAATTCTCAAGCTTCAGCCAGTAACTCCTCTTGTGAGCTTTCACATGCTGAAAAACAAGATATGCACAACAAGTTAACTACACTTTTTTCTATGTTGGATGAGGTTGACAATAGGTACAAACAATATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCAGGTTGTGGGGCAGCTAAACCATACACAGCTCTTGCTCTCCAAACCATTTCATGCCATTTTCGGTGTTTGCGTGATGCAATCAGTGGTCAAATCAGTGCAACACAAAAGAACCTTGGAGAGCATGATGCTTCTGGAAGTAATAAAGGAGTTGGAATGGCAAGACTAAAGTATGTGGACCAACAAATCCGACAACAGAGGGCTCTTCAGCAGTTTGGCATGATGCAACATGCATGGAGACCACAAAGGGGGCTTCCAGAAAGCTCTGTTTCAATTCTTCGTGCTTGGCTTTTTGAGCATTTCCTTCATCCCTATCCAAAGGATTCTGATAAGATCATGCTAGCAAGACAGACAGGCTTGACCAGAAGTCAGGTCTCAAATTGGTTTATAAATGCGCGTGTGCGTCTATGGAAACCTATGATCGAGGAGATGTACAAGCAAGAGACTTGTGATGCTGACATGGAATCTAGTTCTTCATCTGAAAATGTGTCCAAGGTAAAAAAAAGTGATGTCAAGACATCCAATGATATGGATGTTGATTCACAGCAATGTCAAAGTCCAACAGTAGCCAATACAAATCACAGTGGTGTACAAGCTAAGGACCTCAGATATGATGAGGTTATTGATACAGAAATTGTGACATCCACTGGTTTTGCTAGTCTCATACGTGGAGATCATGAGGCTCACACTGAACAAAGATTAGTAAATCAAACTAAGGGGCAAAGGCAAAATTTGGATGATGGTGGTGTCTTTCCTAATGACAGGCTTGTGGCAGTTGGTCCAACATGCCAAATGTCAGAGGTTGGGAGGTTCAAGTCAGGAAGTGGAGTGTCTCTAACATTAGGCTTGCAGGGTGGTGAGAGCCATCTTAGTTTGGTTTCCATGAGGGAGGATGAAATCTACAGTGCGGCTGCAGATTCTACTGTAGGAGTAGAGACAGCAGAACTTGAGTGCATTGGTGCTGGAAACCAGCGCCAAAGATTCAGTTCACCTCATATGTTTCATGATTTTGTAGTATGA 1977 0.4224 MATYYTSSSNQRDAVPMLCLREPLPNSYSETPILPSSMTLYMNSGSYSEAFSGNSQQQSNCFVIPSPSVGASHSTPEQQEILANMGGFQSDIHDLNAWREGRSEMLVRQPMDGQNLQGQGLLSLSLGTHIQMPSIHNRHHSSSFDSFLGTNPSISCNEAYQSGSSKDEGMRHSENFQLGLPEASQDLGRADFSFHEMSSVGRTVPSSKYLKAVQQLLDEVVDIRKAIKRPDMRSHSALENSKKNSKEGDEQLENERPSANGVPNSQASASNSSCELSHAEKQDMHNKLTTLFSMLDEVDNRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISCHFRCLRDAISGQISATQKNLGEHDASGSNKGVGMARLKYVDQQIRQQRALQQFGMMQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMIEEMYKQETCDADMESSSSSENVSKVKKSDVKTSNDMDVDSQQCQSPTVANTNHSGVQAKDLRYDEVIDTEIVTSTGFASLIRGDHEAHTEQRLVNQTKGQRQNLDDGGVFPNDRLVAVGPTCQMSEVGRFKSGSGVSLTLGLQGGESHLSLVSMREDEIYSAAADSTVGVETAELECIGAGNQRQRFSSPHMFHDFVV 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00110 658 SMART HOX_1 398 462 IPR001356 GO:0003677
Cca07g00110 658 MobiDBLite consensus disorder prediction 471 512 - -
Cca07g00110 658 MobiDBLite consensus disorder prediction 231 280 - -
Cca07g00110 658 Pfam Homeobox KN domain 415 454 IPR008422 GO:0003677|GO:0006355
Cca07g00110 658 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 77 621 - -
Cca07g00110 658 Gene3D - 394 472 - -
Cca07g00110 658 MobiDBLite consensus disorder prediction 495 512 - -
Cca07g00110 658 MobiDBLite consensus disorder prediction 257 277 - -
Cca07g00110 658 CDD homeodomain 398 459 IPR001356 GO:0003677
Cca07g00110 658 Pfam Associated with HOX 204 348 IPR006563 -
Cca07g00110 658 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 77 621 - -
Cca07g00110 658 ProSiteProfiles 'Homeobox' domain profile. 395 458 IPR001356 GO:0003677
Cca07g00110 658 SMART prehox3 198 349 IPR006563 -
Cca07g00110 658 MobiDBLite consensus disorder prediction 231 254 - -
Cca07g00110 658 SUPERFAMILY Homeodomain-like 399 465 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00110 Cca-Chr7 1406483 1410369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00110 27 658 Homeobox Transcription Factor Family AT4G34610 40.557 4.41e-128 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca07g00110 POX 2.6e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00110 - - gmx:100801522 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00110 07 1406483 1410369 Cca07g00110 07 1406483 1410369 ECH