Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00109 ATGGCTAAGCCGAAGGCTCAAAGGCGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAAAGCTGGCGATTGCGTGCTCATGCGGCCTTCCGATCCGTCGAAACCGTCGTACGTGGCGAAGATCGAGCGGATCGAAGCCGACGCGCGAGGCGCGAACGTGAAGATTCACGTACGGTGGTACTATCGGCCGGAGGAGTCAATCGGCGGTCGCCGCCAGTTTCACGGTTCCAAAGAGGTTTTCCTCTCCGATCACTTCGACGTTCAGAGCGCCGACACCATCGAAGGCAAGTGTACGGTCCACAGTTTCAAGAGCTACACGAAGCTCGATGCCGTCGGAAACGACGATTTCTTCTGCCGTTTCGAGTACAATTCCTCCTCCGGCGCCTTCAATCCTGATAGAGTCGCCGTGTATTGTAAATGTGAGATGCCTTACAATCCTGATGACCTAATGGTCCAATGCGAGGGCTGCAGTGACTGGTTCCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGTTCTGCCGAAGGTCAAAAAAAGTTGCAAAACTCTCACTCTGCTTCTAGACACTCAGATACAAAGGTGGATACTAAACGCCGTCGTAGGTAA 651 0.5131 MAKPKAQRRTLESYSVKHISKTIKAGDCVLMRPSDPSKPSYVAKIERIEADARGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSSGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEGQKKLQNSHSASRHSDTKVDTKRRRR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00109 216 Gene3D - 1 135 IPR043151 -
Cca07g00109 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
Cca07g00109 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Cca07g00109 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Cca07g00109 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Cca07g00109 216 SMART PHD_3 141 188 IPR001965 -
Cca07g00109 216 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 216 IPR045205 GO:0006325|GO:0035064
Cca07g00109 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Cca07g00109 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Cca07g00109 216 Pfam PHD-finger 141 189 IPR019787 -
Cca07g00109 216 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Cca07g00109 216 PANTHER OS08G0421900 PROTEIN 1 216 - -
Cca07g00109 216 MobiDBLite consensus disorder prediction 194 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00109 Cca-Chr7 1392602 1397873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00109 41 139 Core DNA Replication Machinery Family AT4G14700 30.303 3.39e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca07g00109 BAH 5.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00109 - - gmx:100787968 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00109 07 1392602 1397873 Cca07g00109 07 1392602 1397873 ECH