Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00101 ATGAAGATCCAATGTGATGTGTGTGACAAAGTGGAAGCCTTGGTCTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCACACCTGTGATCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACGCTCGCTTCTCTCTCCACTACCCCACCTCCCAAGACTTCCCTCTTTGTGATATCTGCCAAGAGAAGCGTGCATATGTATTTTGCCAAGAAGACAGGGCCATACTATGCAGGGAATGTGACCTTCCTATCCACAGAGCCAATGAGCATACACAAAACCATAACAGGTTTCTTCTAACGGGTGTGAAGCTTTCTGGCACTTCTTTGGACCCCATTTCGTCGTCCTCCACCAATTGCACCACTGGCTCCCAAGCTCGATCTAAAATGAACAGACCCAGATCAGTTTCCAATGAAAATGCGAGTTCTTCTTTCAAGGTTGAGGACAACGTAGCTAGTGACACCGGTTCGGTTTCAACAACTACAAGCAGCATTTCTGAGTACTTGATTGAAACAATACCCGGTTACTGTTTCGAAGACCTTCTTGATGCTTCATTTGCACCTAATGGTTTCTGTAAGAAGCAGGACTATGAATATGATCATCGTTGGGCATTTCAGGAGATAGATCTTGAAGTTAGGACGCGTTTGTTTCCCTAG 657 0.4612 MKIQCDVCDKVEALVFCPADEAALCHTCDRTIHHANKLATKHARFSLHYPTSQDFPLCDICQEKRAYVFCQEDRAILCRECDLPIHRANEHTQNHNRFLLTGVKLSGTSLDPISSSSTNCTTGSQARSKMNRPRSVSNENASSSFKVEDNVASDTGSVSTTTSSISEYLIETIPGYCFEDLLDASFAPNGFCKKQDYEYDHRWAFQEIDLEVRTRLFP 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00101 218 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cca07g00101 218 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cca07g00101 218 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 201 - -
Cca07g00101 218 CDD Bbox1_BBX-like 57 100 - -
Cca07g00101 218 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 201 - -
Cca07g00101 218 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cca07g00101 218 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Cca07g00101 218 CDD Bbox1_BBX-like 5 47 - -
Cca07g00101 218 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cca07g00101 218 Gene3D Classic Zinc Finger 1 99 - -
Cca07g00101 218 MobiDBLite consensus disorder prediction 111 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00101 Cca-Chr7 1340968 1342333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00101 1 183 C2C2-CO-like Transcription Factor Family AT4G39070 56.650 1.64e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca07g00101 zf-B_box 6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00101 - - gmx:100800981 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00101 07 1340968 1342333 Cca07g00101 07 1340968 1342333 ECH
Cca07g00101 07 1340968 1342333 Cca06g01286 06 27540532 27543928 ECH