Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00097 ATGGAGGTTGCAGTCGACAAAGCCTTGAAACCGAGTTTAAGGAGAGAGTTCATCGTTCAGCAAACGCTCTGCGAGGAAATTTTCTGCCTCAACGCCAACGCCGGCGGCGCCGGCGCCGGCGAAGACTTCTCCGTCGACGACCTCCTCGACTTCTCCAACGGCGAAGAATACAACGAAGAAACAGAAAGCGTGTCCGTTTCGTCGCAGTCGCAGGACCGCGGGGAAGACGATAGCAACTCCAATTCCACCGGCGTTTCGTGTGATTCCTTTTTCTCCACCGAATTGGCCGTTCCGGCCGGTGATTTGGAGGACCTGGAGTGGGTTTCACACTTCGTGGACGATTCTCTCCCGGAGCTGTCACTTTTATACCCGGTTCGTTCGGAGGAAGCGAACCGGTGGGTTGAACCGGAGGCTTCAGCGAAGAAAACGCCTCGTTTTCCGTGGGAAATGAAAGTCAGGACCAAGGCCAGGACCGTACGGAGTAGAAACCCTAGCGCGTGGCCGACGTTGGGCCCCTTGCTCTCGCTCCcgtcttcgccgtcttcgtgttcgtcttcgGTGACGGAACCGCCCGCTAAGAAGCAGAAGAAGCGGGCCGAGGCCCAACCCGTTGGGGCCCAGATTCAGCGGCGGTGCAGTCACTGCCAGGTGCAGAAGACGCCGCAGTGGAGGACCGGCCCACTAGGGCCCAAAACCCTTTGCAACGCGTGCGGGGTTCGCTACAAGTCGGGTCGGCTCTTTTCGGAGTATAGACCGGCGTGCAGCCCCACTTTCCGCAGCGATATTCATTCCAATAGTCACCGTAAAGTGTTGGAGATGCGGAAGAGGAAAGGGGAGGCTGGACCGGCTGCCACCTTAGCCCAGGCCCAGACCCAAATGGTTCTCACCTGCTGA 894 0.5671 MEVAVDKALKPSLRREFIVQQTLCEEIFCLNANAGGAGAGEDFSVDDLLDFSNGEEYNEETESVSVSSQSQDRGEDDSNSNSTGVSCDSFFSTELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEANRWVEPEASAKKTPRFPWEMKVRTKARTVRSRNPSAWPTLGPLLSLPSSPSSCSSSVTEPPAKKQKKRAEAQPVGAQIQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRYKSGRLFSEYRPACSPTFRSDIHSNSHRKVLEMRKRKGEAGPAATLAQAQTQMVLTC 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00097 297 MobiDBLite consensus disorder prediction 58 85 - -
Cca07g00097 297 MobiDBLite consensus disorder prediction 56 85 - -
Cca07g00097 297 Gene3D - 205 257 IPR013088 GO:0006355|GO:0008270
Cca07g00097 297 MobiDBLite consensus disorder prediction 159 205 - -
Cca07g00097 297 SMART GATA_3 206 260 IPR000679 GO:0006355|GO:0043565
Cca07g00097 297 PIRSF Txn_fac_GATA_plant 27 296 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cca07g00097 297 PANTHER GATA TRANSCRIPTION FACTOR 1 297 - -
Cca07g00097 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 208 269 - -
Cca07g00097 297 ProSitePatterns GATA-type zinc finger domain. 212 237 IPR000679 GO:0006355|GO:0043565
Cca07g00097 297 PANTHER GATA TRANSCRIPTION FACTOR 1 297 - -
Cca07g00097 297 ProSiteProfiles GATA-type zinc finger domain profile. 206 242 IPR000679 GO:0006355|GO:0043565
Cca07g00097 297 MobiDBLite consensus disorder prediction 172 190 - -
Cca07g00097 297 CDD ZnF_GATA 211 268 IPR000679 GO:0006355|GO:0043565
Cca07g00097 297 Pfam GATA zinc finger 212 245 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00097 Cca-Chr7 1276121 1277700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00097 42 277 C2C2-Gata Transcription Factor Family AT4G36240 43.496 2.50e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca07g00097 GATA 3.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00097 - - gmx:100808242 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00097 07 1276121 1277700 Cca07g00097 07 1276121 1277700 ECH
Cca04g00378 04 3819842 3821342 Cca07g00097 07 1276121 1277700 ECH