Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00092 ATGGACGTCGAGGACGACCAAGCTCCACCGCTTCACCAACACTCCGATGCACAATGTCTCGCCGACCTCCCCTACGCCGCCGCCGGAGACCCTCTACCCCTCGCCTCAGGGGACTTTAGCCCAGCCCCCGCGCTTGTCGCTGAAGTGGCTACCGCGACCACGCTTGAAACCGATTCAATGACGGAGACGGTGGCCGCCGTACCGGCTGACGACATGATTGAGGAGAAGGGGAATGACGGAACCGATGCGGATGACGTGGCTTTGGAGGCGGGGAACGTGGAAGAGGAAGCGAATTTCACAATTCATGCGGAAGAGGACGAAATTGGGGAGGAAAAGGTGAATGAAGATGCTTTGATGgaagaggaggagggagaagaggaagaacaccaacaaggagaggaggaggaagaagaagaacaccgacatggggaagaggaggaagaagaagaagaacagcaacaaggagaggaagaggaggaagaagaacagcaacaaggtgaagaagaagatgctgatggtgatgctggaatggcaattggagaagacgcagaggagaaggaggagaagagtgcgagtggcgggaagaggaagCGTGGCGCTGGGAAGAATGCTAAGGCTACAGGGAGAGTTGCATCCAGGAAAAAGATGGAAGAGGACGTTTGTTTCATTTGCTTCGACGGGGGTGACCTTGTGCTCTGTGACCGCAGGGGATGCCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGACGAGGCATTCTTTCGGGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCATCTGTGAGAAGAATGCGCACTATATGTGTTATACATGTACGTTTTCTTTGTGCAAGGGTTGCATCAAAGATGCGGTTATCTTATGTGTCAGGGGAAACAAAGGCTTTTGCGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGCAGGGAAACAATGTGGGACAAATAGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAGAAACTATCTCTAACATTTGATGAAATCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAAGAGGAATCACCAGATGAACTTTTTGATGCCAGTAATGATAAGGAATCAGATTCAGATAGCTCCTATGAGAATGTAGATTTGAGCCGTTCTAAAAGAAGAAAGGGCAAGAAACGGGGAAAGTCCCGCTCCAAAGAAGGAAATTCAAATAGTGCAGTGACAATGGTTGGTGCTGATGGGCCATCTGGAGATGACAGCTTTGAGTGGGCTTCGAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGACAAATCTGTTTTGTCACAGTTTGATGTGCAGGCTCTTTTGTTAGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAAATTATTTGTGATGCAAGACTTCAAAATCTGTTTGGTAAACCAAGAGTGGGGCATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCTTTCTAAAAGAGGATTCTCAGGCTGAAGATCTGCAGGGAAGTGTTGTTGACACTGAAATTAGTCATTTGGAAGGTGATGGCAATCCCAATTCATATATGAAAGCTGGCAAAGATAAGAGACGTAAAAATCGTAAAAAGGGTGATGAGAGAGGACTTCAAACTAATGTTGATGATTATGCAGCCATTGATAACCATAATATTAATTTAATTTATCTAAGACGCAATTTGGTGGAAGATCTACTTGAAGATGTAGAGAAGTTTCATGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGATTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCGTATAAAGTTGGTAAAAGGATGACAGATATTTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATTATCTCAAATCAGGAGTTCACCGAGGATGAATGCAAGCGTCTTCGCCAAAGCATAAAGTGTGGCCTCATAAATCGGCTAACTGTGGGTGACATTCAAGACAAAGCATTGGTGCTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTGAGTCACCTCCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAGTTGCAGCTTTTGAAAACCCCTGAAGAACGACAACGGAGGTTGGAGGAAATTCCAGAAATACATGTGGATCCAAACATGGATCCAAGTTACGAGTCTGAAGAAGACGAAGATGAAATGGATGATAAAAGACAAGAAAATTACATGAGACCTAGAGGGTCTACTGCCTTTGGAAGGAGGGGGAGAGATATTGTTTCTCCTAGAAGTGGTTCTATTCCAATTGATTCTTGGGGTGGAACGAGGAATTATTCTAATATGAATCCTGAACTCAGCAGAAATTTATCTAATAAGGGATTTCCAATCAAAGGTGACAATGCTTCTAATGCTAATGAGGTACTTCATGATGCTCAATTGCTCCAGGGAAGAGATAGGGAATCCCAACTATCTAATAGCTGGGAGAGGCAAAAGCTTTCCTTGGAAAGTGGTGCTAAAATTACCCAACCATTGGTAACATCCGAGCCTTTCTCTACTGGTGTATTAGAAGCTTCTGCAGCACCATCTTCTGCCGGAATAACTCCTCCAGCTCTGAAAATTAATGAAACCGAAAAGATGTGGCATTACCAGGATCCATCCGGAAAAGTTCAGGGACCATTTTCTATGGTGCAGCTACGCAAATGGAGTAACACAGGATACTTCCCTGCTGATTTGAGGATTTGGAAAACCACTGAGAAGCAAGATGATTCTATACTTCTAAAAGATGCCTTAGCAGGGAATTTTTCTAAGGAACCATCGATGGTGGATAAGGCTCAAGCTGTTCATGATTTACATTACCCATCCTCGCACTCTAGGAAGTCTGTCCAACAAGGTATAGAAGGTCAAGTTGGAGAAAGACAAACATTTGATCAAAATAGTGGATCTTGGAATTCACATAGTACTCTGGGTTCTCCGGGACAAACCACAGGAGTCAGTTGGAGATCTAAAGATAATATGAATTCTTTAGCAAATAGACCTTCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAATGGCTGGGGTTCTGATGCTGGTGTTAGAAATGAAACAACAAATCTTCCTTCACCTACTCCCCAGACTACTCCTGGTGGGAATAAGGGACAGGCTTTTGAGAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCATAGGAAATCCATTTCCAGGCAATCATGGAGGTTTGCAGGCCTCTGTGGTAGTGCACCCAGAGCATGCCGTACAAAATGCTGAAAAAGGCTCAAATTCACAACCTAGTATTATTTCAGCTTCTACAGATTCTAATCAGTTACATCCTCAAGCAACAGCAATGGCACCTGTTCTAGCTTCAGTGGTTGACATGAAAATGGCAGGTGCAAATATGCAGAATCAGGTTATGAGTGGCCACAACTCTCATGAAGCTCAAGGGCAAGGGTGGGGTTCCACAGCGGTTTCGAAGCCAGAATCACAGGCCTGGGGAGGTACATTATCTCAAAGGATAGAACCAAATAATCCTGCTACTATGCCTGCCCAGCCAGCTTCCCATGGCCCCTGGGGTGATCCTTCGTCTGTCCAGAACACTGCAGCATTTAGTACTGGAAATCCAACTGGGAGTTTACCCACACCTGGATTTATGGGCATGACTACACCTGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAGTTAAACATTACAGCTCCGTCTGCAGCTCCACCCAATATGCCTTGGGGCATAGGCATGCCAGGAAATCAGAATATGAATTGGAGTGGGGTTGTTCCTCCCAATATGAACGTAAACTGGATACCTCCACAGGTGCCGCCACCTGGAAATTCAAATCCAGGATGGGCTGCTCCTAGTCAGGGGCTACCTCCAGTGAATGGAGTTGGCTGGGTTGGACCGGCTCAAGGACGTTCCCATGTAAATGCAAATGCAGGTTGGGCCGGGCCTGGTCAGGGGTTAGCACCTGGTAGTGCCAATCCTGGTTGGGCCGCACCGGCCGGGAATCCAGGCATGTGGGGAAATGAGCAAGGTCATAATGGAGACAGGTTTCCCAACCAAGGCGATCGTGGTATGCATGGTAGAGACAGGTTTCCCAACAGACAGTCATCATTTGGCGGTGGAGGCAGAGGAGGTTCTTCGAGGCCTCCTTTTGGGGGACAAAGAGGAGTCTGCAAGTATCATGAGAGTGGACATTGCAGGAAGGGGTCTTCTTGTGATTTTCTACATACTTAG 4419 0.4291 MDVEDDQAPPLHQHSDAQCLADLPYAAAGDPLPLASGDFSPAPALVAEVATATTLETDSMTETVAAVPADDMIEEKGNDGTDADDVALEAGNVEEEANFTIHAEEDEIGEEKVNEDALMEEEEGEEEEHQQGEEEEEEEHRHGEEEEEEEEQQQGEEEEEEEQQQGEEEDADGDAGMAIGEDAEEKEEKSASGGKRKRGAGKNAKATGRVASRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSICEKNAHYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNEQGNNVGQIDFDDKNSWEYLFKDYYIDLKEKLSLTFDEITQAKNPWKGSDMLHSKEESPDELFDASNDKESDSDSSYENVDLSRSKRRKGKKRGKSRSKEGNSNSAVTMVGADGPSGDDSFEWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFFLKEDSQAEDLQGSVVDTEISHLEGDGNPNSYMKAGKDKRRKNRKKGDERGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDVEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMDDKRQENYMRPRGSTAFGRRGRDIVSPRSGSIPIDSWGGTRNYSNMNPELSRNLSNKGFPIKGDNASNANEVLHDAQLLQGRDRESQLSNSWERQKLSLESGAKITQPLVTSEPFSTGVLEASAAPSSAGITPPALKINETEKMWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWKTTEKQDDSILLKDALAGNFSKEPSMVDKAQAVHDLHYPSSHSRKSVQQGIEGQVGERQTFDQNSGSWNSHSTLGSPGQTTGVSWRSKDNMNSLANRPSPLAVEVPKNPANGWGSDAGVRNETTNLPSPTPQTTPGGNKGQAFENKWSPTPVQLPGSLIGNPFPGNHGGLQASVVVHPEHAVQNAEKGSNSQPSIISASTDSNQLHPQATAMAPVLASVVDMKMAGANMQNQVMSGHNSHEAQGQGWGSTAVSKPESQAWGGTLSQRIEPNNPATMPAQPASHGPWGDPSSVQNTAAFSTGNPTGSLPTPGFMGMTTPEPWRPPASSSQLNITAPSAAPPNMPWGIGMPGNQNMNWSGVVPPNMNVNWIPPQVPPPGNSNPGWAAPSQGLPPVNGVGWVGPAQGRSHVNANAGWAGPGQGLAPGSANPGWAAPAGNPGMWGNEQGHNGDRFPNQGDRGMHGRDRFPNRQSSFGGGGRGGSSRPPFGGQRGVCKYHESGHCRKGSSCDFLHT 1472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00092 1472 SUPERFAMILY GYF domain 916 977 IPR035445 -
Cca07g00092 1472 SMART PHD_3 220 266 IPR001965 -
Cca07g00092 1472 MobiDBLite consensus disorder prediction 365 432 - -
Cca07g00092 1472 CDD Bbox1 266 292 - -
Cca07g00092 1472 SMART swib_2 450 521 IPR019835 -
Cca07g00092 1472 CDD GYF 924 979 IPR003169 GO:0005515
Cca07g00092 1472 Gene3D - 579 707 IPR036128 GO:0003677
Cca07g00092 1472 ProSiteProfiles SWIB/MDM2 domain profile. 435 518 IPR003121 -
Cca07g00092 1472 Pfam GYF domain 927 967 IPR003169 GO:0005515
Cca07g00092 1472 MobiDBLite consensus disorder prediction 1402 1451 - -
Cca07g00092 1472 Pfam SWIB/MDM2 domain 443 516 IPR003121 -
Cca07g00092 1472 SUPERFAMILY FYVE/PHD zinc finger 217 271 IPR011011 -
Cca07g00092 1472 Coils Coil 115 167 - -
Cca07g00092 1472 MobiDBLite consensus disorder prediction 109 178 - -
Cca07g00092 1472 MobiDBLite consensus disorder prediction 1196 1239 - -
Cca07g00092 1472 MobiDBLite consensus disorder prediction 1021 1058 - -
Cca07g00092 1472 CDD SWIB-MDM2_like 441 516 - -
Cca07g00092 1472 ProSitePatterns Zinc finger PHD-type signature. 221 281 IPR019786 -
Cca07g00092 1472 Gene3D SWIB/MDM2 domain 433 526 IPR036885 -
Cca07g00092 1472 SUPERFAMILY Plus3-like 578 706 IPR036128 GO:0003677
Cca07g00092 1472 MobiDBLite consensus disorder prediction 71 209 - -
Cca07g00092 1472 ProSiteProfiles Zinc finger C3H1-type profile. 1447 1472 IPR000571 GO:0046872
Cca07g00092 1472 MobiDBLite consensus disorder prediction 1196 1250 - -
Cca07g00092 1472 SMART gyf_5 925 980 IPR003169 GO:0005515
Cca07g00092 1472 CDD PHD5_NSD 220 265 - -
Cca07g00092 1472 ProSiteProfiles Zinc finger PHD-type profile. 218 284 IPR019787 -
Cca07g00092 1472 ProSiteProfiles Plus3 domain profile. 577 710 IPR004343 GO:0003677
Cca07g00092 1472 MobiDBLite consensus disorder prediction 367 403 - -
Cca07g00092 1472 SMART rtf1 577 687 IPR004343 GO:0003677
Cca07g00092 1472 Gene3D - 925 984 IPR035445 -
Cca07g00092 1472 ProSiteProfiles GYF domain profile. 924 978 IPR003169 GO:0005515
Cca07g00092 1472 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 56 1472 - -
Cca07g00092 1472 MobiDBLite consensus disorder prediction 536 566 - -
Cca07g00092 1472 MobiDBLite consensus disorder prediction 179 195 - -
Cca07g00092 1472 MobiDBLite consensus disorder prediction 752 771 - -
Cca07g00092 1472 MobiDBLite consensus disorder prediction 1078 1104 - -
Cca07g00092 1472 PANTHER UNCHARACTERIZED 56 1472 - -
Cca07g00092 1472 Pfam Plus-3 domain 582 685 IPR004343 GO:0003677
Cca07g00092 1472 SUPERFAMILY SWIB/MDM2 domain 439 517 IPR036885 -
Cca07g00092 1472 MobiDBLite consensus disorder prediction 1021 1104 - -
Cca07g00092 1472 MobiDBLite consensus disorder prediction 752 824 - -
Cca07g00092 1472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 312 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00092 Cca-Chr7 1225189 1236936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00092 218 289 PHD Transcription Factor Family AT5G36670 37.333 3.36e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Cca07g00092 Plus-3 3.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00092 - - pvu:PHAVU_009G003300g 2284.99