Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00081 ATGGACGAGGATGAGCGTGACCAAGGAGGCTCCGGCGTGGCTGAGCAAAGCCCAGAGCAGCTTATCGCCAGGGCCATAGCCCCCGTCAAGAAGAATTTCCTCTGTCCTCCACCAGTTCGGGATTCTACTCCAAACGACGACGTTTCTGTCCCCGACGATAACAAGACCACCTCTGTTCTCGCCAAGGAGAAGAAGTCCAAGCGCCAACTCAAACGCGAACGTCGCCAGGACCAAAAGTCACCGCGAAACCTATGTCCCGAAATTGCCAGGACAGGGGATGTTAGTTCGTGTCCCTATAAAGACAAGTGTCGTTTCAGCCATGATTTGGAAGGCTTCAAGGCACAGAAACCTGCTGATCTAGAAGGACAATGTCCTTTCTTAAAATCTGGGGGCACTTGTCCTTATGGGTTGGCGTGTAGATTTTCAAGTACTCATGAAGTAGCCGAGCCTTCTGGCAATCTGAATGGTCTCAAGAATAGTTCCGAGGTCAATGGATTGAGCAAAGATGTTCAAAAGCTCTTGTGGAAAAATAAGATGAGCTTCTCCAAGGCAGATGCCAAACTCAAAAGTCTTGGCCTTGCGGGACCCAAGTCAAAAAGGAATGACTTTGAAAATAAAGATGGGGGCAACACTGGTCCAAATAATTGTGATCAGTCTGATGACAGTGGCTCTTGTGTTGTTACCTCTGACTCAGGTTCTAAGTTGGAGTGCCCCGCAGAAGTTATGAAAGATGATGACAATGACATAGATGAAAAATCTGAATCTGATGTACTTTGTCCTCAGAAGAGAAGAAAAACTGAAGAAAATAATGGTCCTAAGGAGGCAGAAAATGAAGGTGTGACTGTTACTGAGCAAATTGTTGAAAGAAGTTGCATAAAATCTGAACTAGAAGCTGGAACTGATGCTATGACTCCAGAAACTGATGTAAGCCTGAAGCTACACTCACGTGAAAAGAAGCTTATTGATTACAGGGAGAAGTTGTATCTTGCACCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGATGTAACTTGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCCTCGGAGTGGGCATTGCTAAGACGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGGCATATCCAGATACTGTGGCACGAACAGTTGAACTAATAGAGCAAGAGTGTACAATAGATTTTATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAACAAGGGTGCTGGGTCAGCTCTTCTAACAAAACCAATGCGGATGAAAAGTATTGTAGAAGTAGCTTCAGGCACAGCGGATATACCAATAACTGTCAAGGTACGGACAGCTTATTTTGAAGGGAAGAACCGCATTGATTCTCTGATAGCAGACATTGGCTCTTGGGGAGCCAGTGCTGTCACAATACATGGTAGGTCACGCCAACAACGATACAGCAAGCTTGCTGACTGGGACTACGTCTACCAGTGTACCAGAAAAGCCCCTGCTACATTGCAAGTAGTGGGGAATGGAGATGTTTTTTCATTTGTAGACTGGAACAACCACAGAACTGAATGTCCTGAACTTGCTACATGCATGGTTGCTCGTGGGGCACTGATTAAACCTTGGATATTTACTGAGATAAAGGAACAGAGACATTGGGACATCAGTTCTGGAGAGCGTCTAAATATTTTTAAAGATTTTGTGAATTTTGGCCTTGAACACTGGGGTTCTGACACGAAAGGGGTTGAGACGACGAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGTAGGTATATACCTGTTGGTCTTTTGGATGTTGTTCCACAACGAATAAACTGGCGGCCACCATCTTACCATGGGCGTGATGAGCTTGAGACACTAATGGCTTCAGACTCTGCAGCTGATTGGATACGAATATCAGAGATGTTACTTGGCAAGGTTCCAGTTGGCTTTACATTTGCACCAAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGTTGA 2037 0.4472 MDEDERDQGGSGVAEQSPEQLIARAIAPVKKNFLCPPPVRDSTPNDDVSVPDDNKTTSVLAKEKKSKRQLKRERRQDQKSPRNLCPEIARTGDVSSCPYKDKCRFSHDLEGFKAQKPADLEGQCPFLKSGGTCPYGLACRFSSTHEVAEPSGNLNGLKNSSEVNGLSKDVQKLLWKNKMSFSKADAKLKSLGLAGPKSKRNDFENKDGGNTGPNNCDQSDDSGSCVVTSDSGSKLECPAEVMKDDDNDIDEKSESDVLCPQKRRKTEENNGPKEAENEGVTVTEQIVERSCIKSELEAGTDAMTPETDVSLKLHSREKKLIDYREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTADIPITVKVRTAYFEGKNRIDSLIADIGSWGASAVTIHGRSRQQRYSKLADWDYVYQCTRKAPATLQVVGNGDVFSFVDWNNHRTECPELATCMVARGALIKPWIFTEIKEQRHWDISSGERLNIFKDFVNFGLEHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVVPQRINWRPPSYHGRDELETLMASDSAADWIRISEMLLGKVPVGFTFAPKHKSNAYDRAENG 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00081 678 MobiDBLite consensus disorder prediction 192 279 - -
Cca07g00081 678 MobiDBLite consensus disorder prediction 1 20 - -
Cca07g00081 678 MobiDBLite consensus disorder prediction 34 88 - -
Cca07g00081 678 Pfam Dihydrouridine synthase (Dus) 329 563 IPR035587 -
Cca07g00081 678 ProSitePatterns Uncharacterized protein family UPF0034 signature. 410 428 IPR018517 GO:0008033|GO:0017150|GO:0050660
Cca07g00081 678 SUPERFAMILY FMN-linked oxidoreductases 326 639 - -
Cca07g00081 678 Coils Coil 60 80 - -
Cca07g00081 678 MobiDBLite consensus disorder prediction 207 231 - -
Cca07g00081 678 SMART c3hfinal6 120 147 IPR000571 GO:0046872
Cca07g00081 678 SMART c3hfinal6 80 109 IPR000571 GO:0046872
Cca07g00081 678 MobiDBLite consensus disorder prediction 237 274 - -
Cca07g00081 678 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 23 678 - -
Cca07g00081 678 Gene3D - 74 152 - -
Cca07g00081 678 ProSiteProfiles Zinc finger C3H1-type profile. 123 148 IPR000571 GO:0046872
Cca07g00081 678 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 23 678 - -
Cca07g00081 678 CDD DUS_like_FMN 326 561 IPR035587 -
Cca07g00081 678 Gene3D Aldolase class I 322 564 IPR013785 -
Cca07g00081 678 ProSiteProfiles Zinc finger C3H1-type profile. 79 110 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca07g00081 Dus 9.6e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00081 K05544 - gmx:100783494 1232.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00081 07 1101328 1106988 Cca07g00081 07 1101328 1106988 ECH