Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00080 ATGGTCATGGCTACCTCTAGTCTCTATACTTTTACTTTCTCCACCACCTCTTCCTTCTCCAAACCCTCCTCTTTCACTTTCTGCAGCAACACCACCACCGCTTCTTTTTCCCTTCTCCAACCCAAATCCAAGTCCACCGCGGTAACCGCACTCTCTCACTCTCACAAGCCCCCTTCCCCTGTTCCTCTCCCATGCACCGACCAAAAGCCCCGCGAGGAGTGCGGCGTGGTGGCCATCCACGGCGACCCGGAGGCCTCCCGCCTCTGCTCCCTCGCCCTCCACGCCCTCCAGCACCGCGGCCAGGAGGGCGCCGGCATCGTCTCCGCCCACAACAACCTCCTCCACTCCGTCACCGGCGTCGGCCTCGTCTCCGACGTCTTCCACACCTCCTCCCTCTCCCGCCTCCCCGGCGCCGCCTCCATCGGCCACGTCCGGTACTCCACCGCCGGGCACTCGAAGCTGGCGAACGTGCAGCCCTTCCTCGCCAACTACCGGTTCGGGTCCCTGGCCGTAGCCCACAACGGCAACTTCGTGAACTACCAGTCCCTGAGGTCCCACCTCGAAGAAAACAACGGTTCCATCTTCAACACCACCTCCGACACCGAAGTGGTCCTCCACCTGATCGCCACCTCCCACCACACCTCCCTCCTCTTAAAAATCATGGAAGCCTGCGAAACTCTAGAGGGTGCATACTCCCTGGTTTTCCTCAGCGAGGACAAAGTGATCGCCGTTAGAGACCCCTTCGGCTTCCGACCCTTAGTCATGGGAAGAAGAAAAAACGGCGCTGTCGTTTTCGCCTCGGAAACATGCGCGCTTGACCTAATAGAAGCCACGTACGAAAGAGAGGTGCAGGCAGGTGAAGTCCTTGTGGTCGACCACACCGGAACCCAATCCCTCTGCCTCGTCTCTCATCCACAGCCAAAGCAATGCATCTTCGAGCATATATACTTCGCGCTTCCCAACTCCATTGTCTTCGGGAAATCCGTCTATGAATCTCGTAGAAAGTTCGGCGAACTATTAGCCACCGTGTTTCCCGTTGACTGCGACGTTGTCATAGCGGTTCCTGATTCCGGCGTGGTGGCGGCGCTTGGTTACGCCGAGAAAGCCGGGGTTCCGTTTCAGCAGGGGCTGATTCGGTCGCACTACGTTGGGAGGACGTTCATCGAGCCTTCGCAGAAGATAAGGGACATCGGCGTGAAGCTGAAGCTGTCGCCGGTACGCGCCGTGCTTGAAGGGAAGAGGGTGGTGGTTGTGGATGATTCCATTGTGAGAGGTACCACATCGTCTAAGATTGTGAGGCTGATAAAGGAGGCGGGGGCTAAAGAGGTCCACATGAGGATCGCGTGTCCTCCTATCGTGGCGTCGTGTTATTATGGAGTGGACACGCCGAGTTCGGAGGAGTTGATATCGAATAGGATGAGTGTGGAGGAGATAAGGGAGTTTATTGGCTCCGATTCGCTTGCGTTTCTTCCCTTGGAGAGGTTGAACATGTTGATGGGGACTCAAGCTCCTAACTACTGCTATGCTTGCTTCTCCGGGAACTACCCTGTTCAGCCCCACCAACTTAAACTCAACCTTCCCCACCATGCTTTCCTTAAAAATCAGGAGCAAGTCAACGTTGTTAGTGTCTGA 1632 0.5674 MVMATSSLYTFTFSTTSSFSKPSSFTFCSNTTTASFSLLQPKSKSTAVTALSHSHKPPSPVPLPCTDQKPREECGVVAIHGDPEASRLCSLALHALQHRGQEGAGIVSAHNNLLHSVTGVGLVSDVFHTSSLSRLPGAASIGHVRYSTAGHSKLANVQPFLANYRFGSLAVAHNGNFVNYQSLRSHLEENNGSIFNTTSDTEVVLHLIATSHHTSLLLKIMEACETLEGAYSLVFLSEDKVIAVRDPFGFRPLVMGRRKNGAVVFASETCALDLIEATYEREVQAGEVLVVDHTGTQSLCLVSHPQPKQCIFEHIYFALPNSIVFGKSVYESRRKFGELLATVFPVDCDVVIAVPDSGVVAALGYAEKAGVPFQQGLIRSHYVGRTFIEPSQKIRDIGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLIKEAGAKEVHMRIACPPIVASCYYGVDTPSSEELISNRMSVEEIREFIGSDSLAFLPLERLNMLMGTQAPNYCYACFSGNYPVQPHQLKLNLPHHAFLKNQEQVNVVSV 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00080 543 Pfam Phosphoribosyl transferase domain 333 445 IPR000836 -
Cca07g00080 543 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 74 294 IPR017932 -
Cca07g00080 543 CDD PRTases_typeI 337 448 IPR000836 -
Cca07g00080 543 Pfam Glutamine amidotransferase domain 155 272 IPR017932 -
Cca07g00080 543 TIGRFAM purF: amidophosphoribosyltransferase 74 516 IPR005854 GO:0004044|GO:0009113
Cca07g00080 543 Hamap Amidophosphoribosyltransferase [purF]. 73 515 IPR005854 GO:0004044|GO:0009113
Cca07g00080 543 SUPERFAMILY PRTase-like 310 520 IPR029057 -
Cca07g00080 543 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 28 524 - -
Cca07g00080 543 Gene3D - 334 498 IPR029057 -
Cca07g00080 543 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 28 524 - -
Cca07g00080 543 MobiDBLite consensus disorder prediction 47 66 - -
Cca07g00080 543 PIRSF Pur1 70 528 IPR005854 GO:0004044|GO:0009113
Cca07g00080 543 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 74 297 IPR029055 -
Cca07g00080 543 CDD GPATase_N 74 325 IPR035584 -
Cca07g00080 543 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 74 516 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00080 Cca-Chr7 1096942 1098829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00080 67 534 PRT Gene Family AT2G16570 75.267 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00080 K00764 - gmx:548065 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00080 07 1096942 1098829 Cca07g00080 07 1096942 1098829 ECH