Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00073 ATGGTGCTGATTGTGCATCGCGTATATCCTCCTATTCTCAAGTGGATACTCTTAATTGCTCTGTGCACTATATCAGattgctatgacccgttggatccaaatgggaacattacgGCAAGGGTGACCCTTGAAAACTACTATCTATATCGTCATATAGACAAACCAGGGTGGAAGCTAGGATGGACATGGGATAACAATGAAGTGATATGGTCAATGAGTGGTGCCATAGCAACTGACAGAGGGAATTGCTCATCTTACAGCGGTTCTCAGATGCCACATTCCTGCAGGAAAGATCCCATCATAGTGGATCTCTCTCCAGATGACTCACAAAACAGGTCAGAACATTGTTGTCGTGGAGGCCTCCTCTCTGCCTCCTCTATTGACCCTTCCAATGCATTCTCTTCATTTGAACTTGAAGTCCGCAACTTGGGAGATAACCCTCTTGGACAAGCACCTAATAGTCTTACATTGATGGCCCCAGGTCCTGGTTATACTTGTAGCCCCTTTCTTGAAACTAATCCTACAGTGTCCTCAGATTTTGGGGGACTGAGACAAGTTCCTGTTCTCAGAACTTGGAAGTCATCATGTACATACTCCAGTTTCATAGCAAACACATTGCCAGTATGCTGTGTTTCCCTCTCATCATTTTACAATCCCTCCATCACATCTTGCCGTAATTGTAGTTGTGGATGCAGAGAAGCAGATAAAAACACAGCATCTTGCATAAGGCCTAGCGATCCCTTGACGCGGTCTAGTGAGGACAGCAAAACTGAAATTGTTGAATGCACCGACCACATGTGCCCAGTTCGAGTCCATTGGCATTTCAAGAACAACTATATGAAGCAGTGGAGGGTCAAGCTCACAATTTCTAACTACAATTACAACAGAAACTACTCAAACTGGAACGTGCTGGTTCAACATCCTGGTTTCTCCCAAAACGCAACAACTTACAGCTTCAACAGCTCTAAACTTCCCACTCTTGGGCTCCATGATGGGGTTTCGCTTTTTTGGGGGATAGATTATTACAACAGTGAGCTATTGCATTCTGATAAGGATGGAGTGGGTCTTGTGACAACAGAAATACTATTGGATAAAGATCCAAATTCTTTCACAGTACGTAATGGATGGCCATTTCCGAGAAGAATATATTTCAACGGGGAGAACTGTGAAATGCCTTTACCTGACACGTTTCCTATGTTACCAAATGGTAGCTCAAGTTTACGACCAACTTACTGTGTTTTCAGTCTTTCATTGATCCTTTTGTTTCTTGCCCTACTACTCCTTTGA 1287 0.4219 MVLIVHRVYPPILKWILLIALCTISDCYDPLDPNGNITARVTLENYYLYRHIDKPGWKLGWTWDNNEVIWSMSGAIATDRGNCSSYSGSQMPHSCRKDPIIVDLSPDDSQNRSEHCCRGGLLSASSIDPSNAFSSFELEVRNLGDNPLGQAPNSLTLMAPGPGYTCSPFLETNPTVSSDFGGLRQVPVLRTWKSSCTYSSFIANTLPVCCVSLSSFYNPSITSCRNCSCGCREADKNTASCIRPSDPLTRSSEDSKTEIVECTDHMCPVRVHWHFKNNYMKQWRVKLTISNYNYNRNYSNWNVLVQHPGFSQNATTYSFNSSKLPTLGLHDGVSLFWGIDYYNSELLHSDKDGVGLVTTEILLDKDPNSFTVRNGWPFPRRIYFNGENCEMPLPDTFPMLPNGSSSLRPTYCVFSLSLILLFLALLLL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00073 428 PANTHER COBRA-LIKE PROTEIN 12 422 - -
Cca07g00073 428 Pfam COBRA-like protein 38 199 IPR006918 GO:0010215|GO:0031225
Cca07g00073 428 PANTHER PROTEIN COBRA 12 422 IPR006918 GO:0010215|GO:0031225
Cca07g00073 428 PIRSF COBRA 1 428 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00073 Cca-Chr7 943716 946100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00073 16 425 COBRA Gene Family AT3G02210 44.470 1.13e-126 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00073 - - ccaj:109801855 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00073 07 943716 946100 Cca07g00073 07 943716 946100 ECH