Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00062 ATGGAGAGTGATGCCGTTCGACGTTGGGCGTTGGAGTTCCTTCTTCGGAGCCCATTCGTAGCCGATGACCTAATTGAAAAAGTGCTTCCTATAATCCCCGTTTCAGACGCTGATTCTCGCCTCAAGAAGACCCTTCTCCTCAGAGCCCTTCAATACCACGTCTTCGCACTCTCCATCCCTGAACCCCTTCTCCAAATCCTCGAAATCCTCGAAGAATTCCACCGTATCGATGGCTCTCCGGTCACCGCCGCTATGAGTGCCGCCTACTGCGCCGTCGCGGTCGAGTGCACGCTCAAGTACCTACAACTGGAAGACCACGGTAAAAACCCCTTCTACTTCAATGCTGTGGAAAGGATATGGCGCGCTAGGGTTCCGCACATGAACAGATCCGGCGACTTCGAAGGAAGCCTTATGTTCACCGAGGAGTTGAAGCGGTGGAGCAGCGACATCGAAGCTTCTCTTTCGGACTCGCAATTGAGGGAGAGGCTGGCCTCCATTGATACCAGAAGAGACGCCATCATCAAGCTTAGGGTTTACTTGGCCGAGGAATGGGCCAATTTGGGCCCTTCCTTTCTTGAGGTAGCTGCGTCCGTGCACACAAACAAGGCCCCAACTACAGAACACTTGGAGGCCCAACACCAACACCAAGAGAGAGAAATTCAGGACTGTAGCAATGCTGCTGATGAGCAAATACCTTTAGCAACAACTATTGAAGTCCAAAAGGTTGGGGAATGCGCTTCATCAGGGTTGCAAACATTGGTCAAGGATTCTCTACTTAATTCATCAGAAGTCAATGAGGAAGCACATGTTGAAGAACAGAGTAGAGATGCAGATATACCATGTCCAGATGTTATTAATAATAACGAGGCTGATATGGCGGAAAAAGATCAAGCTCCTGTCCCCCATATTCGTGTTCAAAAGCCAAGTTTGATGGAAGAGAATACTGCTGCTCGTATTTATGAGTGGGACGAGTCCATAGATGGCATGCAGGGTGGAACATCAAATCCTGAAAGAAGATTTCATTTGCCTAGCCCCAAGGTCAGAAAGCTTTCTCCATTGAAGAAGTATGTACCCACTAAGATTACAATGAGGAGAAGAGCAAAAAAATGGAGTCCGTTGGAAATGGAGACTCTAAAGACTGCTGTAGACAAATTTGGCAAGGGAAATTGGAAAATAATCTTAAATTCTCACAAAGATATATTTGAAGAAAGAACTGAAGTTGATTTGAAGGATAAATGGAGAAACATGACACGGTATGGATCCAAGTGA 1269 0.4697 MESDAVRRWALEFLLRSPFVADDLIEKVLPIIPVSDADSRLKKTLLLRALQYHVFALSIPEPLLQILEILEEFHRIDGSPVTAAMSAAYCAVAVECTLKYLQLEDHGKNPFYFNAVERIWRARVPHMNRSGDFEGSLMFTEELKRWSSDIEASLSDSQLRERLASIDTRRDAIIKLRVYLAEEWANLGPSFLEVAASVHTNKAPTTEHLEAQHQHQEREIQDCSNAADEQIPLATTIEVQKVGECASSGLQTLVKDSLLNSSEVNEEAHVEEQSRDADIPCPDVINNNEADMAEKDQAPVPHIRVQKPSLMEENTAARIYEWDESIDGMQGGTSNPERRFHLPSPKVRKLSPLKKYVPTKITMRRRAKKWSPLEMETLKTAVDKFGKGNWKIILNSHKDIFEERTEVDLKDKWRNMTRYGSK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00062 422 PANTHER MYB TRANSCRIPTION FACTOR 4 419 - -
Cca07g00062 422 Coils Coil 206 226 - -
Cca07g00062 422 PANTHER MYB TRANSCRIPTION FACTOR 4 419 - -
Cca07g00062 422 Pfam Myb-like DNA-binding domain 368 416 IPR001005 -
Cca07g00062 422 Gene3D - 370 422 - -
Cca07g00062 422 ProSiteProfiles Myb-like domain profile. 362 417 IPR001005 -
Cca07g00062 422 SUPERFAMILY Homeodomain-like 369 420 IPR009057 -
Cca07g00062 422 CDD SANT_TRF 368 418 - -
Cca07g00062 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 362 421 IPR017930 -
Cca07g00062 422 SMART sant 366 419 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00062 Cca-Chr7 855317 858908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00062 8 416 Single Myb Histone (SMH) Gene Family AT1G15720 29.056 2.05e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca07g00062 Myb_DNA-binding 3.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00062 - K11111 ccaj:109817184 818.535