Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00059 ATGAGTGAGAGTGAGAAGCAGAGGGTAACCGGCAAggtcaagtggttcaatgaccagaagggcttcggcttcataaccaccgacgacggcggcgaggatctcttcgtccaccagtcctccatccgatccgacggtttccgcagcctcgccctcggtgagtccgtcgagttcGTTATCGACTCCGATCCGGAAGGCCGCACCAAGGCGGTCGATGTCACCGGTCCTGACGAGACGCCAGTCCAGGGCACCCgcggcggcggcggcggaggaggaggaggaggagcaagaggtggatacggcggcggtggaggaggaggaagaggctacggcggaggccgcggcgggagaggtggctacggaggcggaggtggaggcggaggcggatatggaggtggtggctacggaggcggtggatacggaggtggCTGCTACAAGTGTGGTGAGACTGGTCACATAGCTAGGGACTGCAGCCAAggtggcggcggcggcggtggaaggtacggcggaggtggtggaggaggcggcggGAGCTGCTACAACTGTGGGGAGTCCGGGCATTTTGCGAGGGACTGCCCTTCGAATGCTCGTTGA 591 0.225 MSESEKQRVTGKVKWFNDQKGFGFITTDDGGEDLFVHQSSIRSDGFRSLALGESVEFVIDSDPEGRTKAVDVTGPDETPVQGTRGGGGGGGGGGARGGYGGGGGGGRGYGGGRGGRGGYGGGGGGGGGYGGGGYGGGGYGGGCYKCGETGHIARDCSQGGGGGGGRYGGGGGGGGGSCYNCGESGHFARDCPSNAR 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00059 196 Pfam Zinc knuckle 142 158 IPR001878 GO:0003676|GO:0008270
Cca07g00059 196 Pfam Zinc knuckle 177 193 IPR001878 GO:0003676|GO:0008270
Cca07g00059 196 ProSiteProfiles Zinc finger CCHC-type profile. 178 193 IPR001878 GO:0003676|GO:0008270
Cca07g00059 196 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 194 - -
Cca07g00059 196 Gene3D - 1 85 IPR012340 -
Cca07g00059 196 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Cca07g00059 196 SUPERFAMILY Retrovirus zinc finger-like domains 133 194 IPR036875 GO:0003676|GO:0008270
Cca07g00059 196 SMART c2hcfinal6 142 158 IPR001878 GO:0003676|GO:0008270
Cca07g00059 196 SMART c2hcfinal6 177 193 IPR001878 GO:0003676|GO:0008270
Cca07g00059 196 MobiDBLite consensus disorder prediction 66 94 - -
Cca07g00059 196 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Cca07g00059 196 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Cca07g00059 196 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Cca07g00059 196 ProSiteProfiles Zinc finger CCHC-type profile. 143 158 IPR001878 GO:0003676|GO:0008270
Cca07g00059 196 Pfam 'Cold-shock' DNA-binding domain 10 74 IPR002059 GO:0003676
Cca07g00059 196 Gene3D - 173 196 - -
Cca07g00059 196 Gene3D - 140 166 - -
Cca07g00059 196 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Cca07g00059 196 SUPERFAMILY Nucleic acid-binding proteins 7 74 IPR012340 -
Cca07g00059 196 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Cca07g00059 196 SMART csp_8 10 75 IPR011129 GO:0003676
Cca07g00059 196 PANTHER COLD SHOCK PROTEIN 1 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00059 Cca-Chr7 818513 819656 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Cca07g00059 CSD 3.3e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00059 - - gmx:100820359 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00059 07 818513 819656 Cca07g00059 07 818513 819656 ECH