Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00052 ATGCGTAGAGCGATCTCCTTTCTCGTTCAACCGCGATGCCTCCTTCTCTTCCTTGTTCTCTCAATTTTCTTGATTTTCGCAATATCTGGTTCCAAATGGCTTGAAGAGAAAGAAGAAGAAAATCCTGAAATTACACACAGAGTATTCTTGGAGGTTGATATTGATGGACAACGATTAGGTAGGATTGTCATTGGATTGTATGGCCAAGTTGTACCAAAAACTGTGGGTATTGCCAGTGGTGTAAAACTTCATTACAAAGGAATACCATTTCATAGGATAATATCTGGTTTCGTAATTCAGGGTGGAGATATTGTTCATCATGATGGAAGAGGATATGAATCCGTTTATGGCAGCACCTTTCCTGATGAGACTTTCAAGACAAAACATTCACATGCTGGTGTTGTCTCCATGGTGAATTCGGGTCCTGATTCCAACGGCTCACAGTTTTTTATCACTACAGTGAAGGCCAGCTGGTTAGATGGAGAACATGTTGTGTTTGGCAAGGTTGTCCAAGGCATGGATACTGTATTTGCAATTGAAGGGGGTGCTGGAACCTACAATGGGAAACCCAGAAAGAAGGTAGTGATTGCAGACTCTGGAGAGATACCCAAGAGCCAGTGGGATGAGGAAACATGA 636 0.4245 MRRAISFLVQPRCLLLFLVLSIFLIFAISGSKWLEEKEEENPEITHRVFLEVDIDGQRLGRIVIGLYGQVVPKTVGIASGVKLHYKGIPFHRIISGFVIQGGDIVHHDGRGYESVYGSTFPDETFKTKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVVQGMDTVFAIEGGAGTYNGKPRKKVVIADSGEIPKSQWDEET 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00052 211 Gene3D - 34 208 IPR029000 -
Cca07g00052 211 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 22 211 - -
Cca07g00052 211 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 160 IPR002130 GO:0000413|GO:0003755
Cca07g00052 211 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 133 148 IPR002130 GO:0000413|GO:0003755
Cca07g00052 211 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 IPR002130 GO:0000413|GO:0003755
Cca07g00052 211 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 90 102 IPR002130 GO:0000413|GO:0003755
Cca07g00052 211 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 161 176 IPR002130 GO:0000413|GO:0003755
Cca07g00052 211 SUPERFAMILY Cyclophilin-like 43 202 IPR029000 -
Cca07g00052 211 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 53 199 IPR002130 GO:0000413|GO:0003755
Cca07g00052 211 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 22 211 - -
Cca07g00052 211 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 49 201 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00052 Cca-Chr7 726701 731141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00052 60 199 U-box Gene Family AT5G67530 39.860 1.53e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00052 - - gmx:100808240 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00052 07 726701 731141 Cca07g00052 07 726701 731141 ECH