Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00050 ATGGGAAGGTCCCCTTGTTGCGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGATGATCGCCTCATAGCTTACATTAGAGCTCACGGTGAAGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGACTCCTCCGCTGCGGCAAGAGTTGCCGCCTCCGCTGGATCAACTATCTCCGCCCTGACCTCAAACGTGGCAATTTCACCGAAGAAGAAGATGAACTCATCATCAAACTCCATAGCCTCCTTGGCAACAAGTGGTCTCTAATAGCGGGAAGGTTACCGGGGAGAACAGACAATGAGATCAAGAACTACTGGAACACTCACATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAACGCACCGCCCTCTCAACGACTCTTCTCATCATAATCAAGTTCAAGAACCTGCACCCACCATGTCTTTTGCTCCCAAACAAGAAGAGGAGGTGTTTCAGGAGGTTAAGGATTCCAAGAGTCCCACATCGGAACGCTGCCCTGACTTGAACCTTGAGCTAACTATAAGTCCTCCTCATCAGGCTCAAGAGGCGCTGAAGACTAGTGTTGGGAGAGGCCTTTGCTTTGCCTGTAGTTTGGGTTTGCAGAATAGCAAAGATTGCAGCTGTGGGGACAATGGTAACACAAGTACTGCCACTGGTTATGATTTCTTGGGCTTGAAAACCACTGTTTTGGATTACAGAAGCTGA 720 0.4958 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDSSHHNQVQEPAPTMSFAPKQEEEVFQEVKDSKSPTSERCPDLNLELTISPPHQAQEALKTSVGRGLCFACSLGLQNSKDCSCGDNGNTSTATGYDFLGLKTTVLDYRS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00050 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca07g00050 239 SMART sant 13 63 IPR001005 -
Cca07g00050 239 SMART sant 66 114 IPR001005 -
Cca07g00050 239 CDD SANT 69 112 IPR001005 -
Cca07g00050 239 CDD SANT 16 61 IPR001005 -
Cca07g00050 239 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Cca07g00050 239 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca07g00050 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca07g00050 239 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca07g00050 239 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca07g00050 239 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca07g00050 239 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 218 - -
Cca07g00050 239 Gene3D - 69 142 - -
Cca07g00050 239 Gene3D - 14 66 - -
Cca07g00050 239 PANTHER MYB DOMAIN CLASS TRANSCRIPTION FACTOR 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00050 Cca-Chr7 698495 700018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00050 1 239 MYB Transcription Factor Family AT4G38620 60.854 6.44e-108 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca07g00050 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00050 K09422 - oeu:111384643 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00050 07 698495 700018 Cca07g00050 07 698495 700018 ECH