Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00039 ATGTCGAAGGAAGTGAGCCAAGAAGGAGAGCAGAGGAAGGACTACGTGGACCCTCCGCCAGCGCCTCTCATCGACTTGGCGGAGATTAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATCGCCACACTCCTCTTCCTCTACGTGACGGTGGCCACCGTCATCGGCCACAAGAAGCAGAGCGGAGCATGCGAGGGCGTTGGGCTGCTGGGGATCGCATGGGCCTTCGGCGGCATGATCTTCGTGCTGGTGTACTGCACCGCCGGCATTTCAGGTGGACACATAAACCCTGCGGTGACTTTTGGACTCTTCCTGGCGCGCAAGGTGTCTCTCCTCAGAGCCCTCCTTTACATGGTAGCGCAGTGCTTGGGCGCTATCTCCGGCGTTGGCTTGGTGAAGGCCTTCATGAAGCACTCCTACAACTCCCTGGGCGGCGGTGCTAACTCCGTCAACTCCGGCTACTCCAAAGGGTCTGCTCTGGGTGCTGAGATTATCGGCACTTTTGTCCTCGTTTACACCGTTTTCTCGGCCACCGACCCCAAGAGAAGCGCTCGTGACTCTCATGTCCCAGTTTTGGCCCCATTGCCCATTGGGTTTGCAGTTTTCATGGTTCACTTGGCTACCATTCCCATCACGGGTACCGGGATTAATCCAGCTAGGAGCTTCGGTGCTGCTGTTATCTACAACAATGCCAAAGTTTGGGATGACCATTGGATCTTTTGGGTTGGGCCATTTGTGGGAGCGTTGGCGGCGGCGGCCTACCACCAGTACATACTGAGAGCGGCGGCTATTAAGGCGTTGGGATCGTTCCGGAGCAACCCCACCAACTAA 837 0.5699 MSKEVSQEGEQRKDYVDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQSGACEGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALLYMVAQCLGAISGVGLVKAFMKHSYNSLGGGANSVNSGYSKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNAKVWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00039 278 SUPERFAMILY Aquaporin-like 28 262 IPR023271 -
Cca07g00039 278 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 278 IPR034294 -
Cca07g00039 278 Gene3D Glycerol uptake facilitator protein. 21 278 IPR023271 -
Cca07g00039 278 CDD MIP 36 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00039 278 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Cca07g00039 278 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00039 278 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00039 278 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00039 278 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00039 278 PRINTS Major intrinsic protein family signature 200 222 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00039 278 PRINTS Major intrinsic protein family signature 240 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00039 278 TIGRFAM MIP: MIP family channel proteins 40 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00039 278 Pfam Major intrinsic protein 29 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00039 278 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00039 Cca-Chr7 540072 541502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00039 1 278 Major Intrinsic Protein MIP AT2G16850 89.568 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00039 K09872 - vra:106761912 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00039 07 540072 541502 Cca07g00039 07 540072 541502 ECH