Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00032 ATGGTGGTTGCGCAACTTTTTCCTTCTTCGAATGTGTTCCTCATCCACTCACAGTCACAGAGACGCATTCTCTCTTTCTCCGCCAATCAAGCACATGACACAACCGCAACCAATAACGCCGATAACGGTAACGATTCTCCCTTCTCAAGTTTCGGAAGACTCAAAGCCCACAAAGTCAAGACTCTGCTACACAGAAGCAAGGAGCAAAGACGCGGCGTTCAAGTTCAAGATGAAGATGTTGCCCCTAGACGTTCACGAGGAGGATGGGATACCATTCCCAAGTTTCCCCCACAAACCAAATCCCCCACTGACACCAACTTTTTCAGTCTCAAATCCTTTAAACAAATAGGCTGCACCGATTATATCATTCAATCCCTTCAAAAACTCTCCTTCACGCGCCCTTCCCATGTACAGGCCATGGCATTTGCACCTGTTTTTAGAGGAAAGACTTGTGTCATTGCTGATCAAAGTGGTTCTGGAAAGACATTGGCTTATCTTGCGCCAATCATTCAGCGTCTTAGACAAGAAGAACTTGATGGGCGTAGTAAATCCTCTTCACAAGCTCCTAGAGTCCTTGTTTTGGCACCCACTGCTGAGTTAGCTTCTCAGGTCTTGGATAATTGTCGATCCTTGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTTACAGGAGGTTTTCGACAGAGAACTCAACTGGAAAATCTACAGCAGGGAGTTGATGTCTTAATAGCTACACCTGGCCGTTTTTTGTTCCTCATAAATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATACTCTTTGGGGATGAGGACTTCGAAGTGGCTCTTCAATGCTTGATCAATTCTTCACCCGTTGACACACAGTATTTATTTGTGACTGCAACTTTACCAAAAAATATTTATAGCAAATTGGTCGAAGTTTTTCCAGATTGTGAAATGATTATGGGGCCTGGTATGCACCGAATAAGTTCTCGCCTTGAAGAGATTGTAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAAGATGCACTTTTGCAACTTGTGGAGGAAAATCCTGTCCCAAGAACCATTGTGTTCTGCAACAAAATTGAAACATGCAGAAAAGTTGAAAATTCGTTAAGGCGGTTTGATAGAAAAGGAAATCGCGTGCAAGTTCTACCCTTCCATGCTGCCATGACACAAGAATCACGACTTGCTAGTATGGAAGAGTTTACTAGTCCTCCATCAAAAGGAGTCTCCCAGATTATGATTTGCACGGACAGAGCATCACGGGGAATAGACTTTGCTGGAGTGGATCATGTCATGCTCTTTGACTTCCCACGTGATCCAAGTGAATATGTACGGCGTGTTGGAAGAACAGCCAGAGGTGCCAAGGGAGTGGGCAAGGCATTTATCTTTGTGGTTGGAAAGCAAGTATCCCTTGCACGCAAAATAATGGAAAGAAATCGAAAGGGTCATCCACTACATGATGTGCCTTCCGCTTATTAG 1545 0.4369 MVVAQLFPSSNVFLIHSQSQRRILSFSANQAHDTTATNNADNGNDSPFSSFGRLKAHKVKTLLHRSKEQRRGVQVQDEDVAPRRSRGGWDTIPKFPPQTKSPTDTNFFSLKSFKQIGCTDYIIQSLQKLSFTRPSHVQAMAFAPVFRGKTCVIADQSGSGKTLAYLAPIIQRLRQEELDGRSKSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFLFLINEGFLQLTNLRCAVLDEVDILFGDEDFEVALQCLINSSPVDTQYLFVTATLPKNIYSKLVEVFPDCEMIMGPGMHRISSRLEEIVVDCSGEDGQEKTPDTAFLNKKDALLQLVEENPVPRTIVFCNKIETCRKVENSLRRFDRKGNRVQVLPFHAAMTQESRLASMEEFTSPPSKGVSQIMICTDRASRGIDFAGVDHVMLFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAY 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00032 514 SMART helicmild6 386 476 IPR001650 -
Cca07g00032 514 CDD DEADc 122 309 - -
Cca07g00032 514 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 514 IPR001650 -
Cca07g00032 514 SMART ultradead3 130 338 IPR014001 -
Cca07g00032 514 Pfam DEAD/DEAH box helicase 136 309 IPR011545 GO:0003676|GO:0005524
Cca07g00032 514 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 36 512 - -
Cca07g00032 514 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Cca07g00032 514 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 323 IPR014001 -
Cca07g00032 514 MobiDBLite consensus disorder prediction 66 101 - -
Cca07g00032 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 487 IPR027417 -
Cca07g00032 514 Gene3D - 332 508 IPR027417 -
Cca07g00032 514 Pfam Helicase conserved C-terminal domain 359 475 IPR001650 -
Cca07g00032 514 CDD SF2_C_DEAD 335 486 - -
Cca07g00032 514 Gene3D - 91 323 IPR027417 -
Cca07g00032 514 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 36 512 - -
Cca07g00032 514 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00032 Cca-Chr7 473069 476748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00032 110 497 Eukaryotic Initiation Factors Gene Family AT3G19760 26.972 5.74e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00032 K13179 - gmx:100780849 816.994