Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00031 ATGTCCTCCATGGAGATTGATCTTGAATTACCTGTATGTGAGCATGAGAAGCTTAATGTTGGAAATGATGTTACAGATACAGCATGTGATATGCATATTGAAGAGCAAAGCATTAATCCTTCCTCAATGACTGAACATTGTAAGGAAGCTTTAGGTGAAAATGCTTTATTTTTCCAGGATCAGGTGGATTTGAATTCCAATCAAGTGGATGCTATTGGTAAATTTCCCTTTAAAGAACCACAGAATGGTTtggaatttgaatccaaggaggctgcctattctttctacagagaatatgctcgctcagtgggatttggcatcacgataaaagccagtcgacgctcaaaaaagtctggtaaatttattgatattaaaattgtttgttccagatttggaagtaagcgtgagtccagtacagcggttaatccacgaccatgtacaaagacagactgtaaggctagcatgcatatgaagaagaagctagatggtaactggatcatatacaattttgtaaaagatcacaatcatGAGATCTGTCCAGATGATTTTTTCAGGGGACGTAGCAAACAAACAAATAATGTAGCTTGTCAGAAGAAGGGTATGCAATTGGCTCTAGATGagggagatatgcagttgatgattgaatacttagtgtctatgcagtgtgaaaaccccaacttcttctatgcaatagacctggatcagaatagacatttgagaactgtattttgggttgactcaaaaggaagacttgattatcaaaacttccatgatattgtgttgatcgacactttttacctgaaaaacagatataaaattccttttgttccttttgtcggagtcaaccatcacttccagtacattttacttggatgtgcactagttggggaggagactgtttcagcttttatatggttaatgcgagcatggcttaaagcaatgggtaacctacctccaaaggtgattatcacagaccaagagcaatgcttgaaagaagctgtcgtggaagtgtttccagataaacgtcattgtttctgtctatcacaaattttgtgtaaaatcaccaagaatttggattatatcatagatcaaaataataattttatggaaaaatttgacaaatgcgttcataattcctgttcacatgagcagtttgaaaagagatggtggaaactgatcaatagatttgaactagaggatgatgaatgcgttcagtcattgtatgaagaccgtaaaaagtgggtgcctacatacatgcgagacgtttctttggctgggttatcaacaactgtaaggtctgaaagtatttcatCATCCTTTGACAAGTACATTTGTGTTGATTCTACCTTTAAGGAGTTTATTGAACAGCATAAAGTTTTCTCTACAGACAGTTTTGAGATGGAAGCGAAAGCTGATTCTGAAACAAGACAAAAGAAACCTGCATTAAGATCTTTATCACCTTTTGAGAAGCAGCTCTCTACAATTTATACATTTGTCATATTTGGAAAATTTCAATTGGAGATATTAGGAATGATGTCTTGTCATCTCCAGAAAGAAACAGAAGACAGGGCAAGTGTAACATTTCTTGTTGATGATTTTGAGAAGCAGAAGAAGTTTATTGTTTCTTGGAATGAAGCAGATTTGGATGTCTGTTGTTCATGTTGTTTATTTCAATACAAAGGTTTTCTATGTAGACATGCAATACTTGTTCTTCAAAAGTCTGGCATAACCaacatcccatcccgttatattttaaaacgttgggcaaaagatgcaaaggCCAATCGATTTGCTGGTGACATAAGTACCAGGACTTCTAATAGAGTTCAACGTTTTAATGACCTTTGTAGGCGGGCAATTATATTAAGTGAACTTGGGTCTTTATCTGAAGATACTTACCGTGTTGCATCTCAGGCATTGGAAGAAGTCTATAAACAATGTGTGAATGCAAACAATTCTGCTGGAAGCACTTTAGAGCCCAACAAGATGGCTCTCAATGTTTTTGATGTTGAAGAGAAAAATTATGGCTGCCACAGGGCAAAACCTACCAAGAAAAGAAAGTCGTTTAATAAAAGGGAATGCTCTGATTCAGAAAGAATCAATATCAAGATGCTGGACGATTTCCAAAAGCGGGAACAGAGAAATTCGAGAGAACCCAACTTCGATAATTGTTACATATCTCAGCAGGACATGCAAACTGTGGACTTAGATTCTAGAGCTTCAACTCTTGATGGCTATTATGGGGCTCAACAGAATGTGCTTGAAGACGCGCAGATGAACTCAGTTTCTGTCGTGCATGATGGCTATTATAGCAGTCAACTGGCCATTCTAGGGCTGGGGCAAATGCCTTCCGTGTCAAGCCGTGGTCCACATTATGGGATGCAGCACAGCATACAAGGACCGATAGTGGGTTATGGTTCACATTTTGAAACTATATGA 2439 0.2239 MSSMEIDLELPVCEHEKLNVGNDVTDTACDMHIEEQSINPSSMTEHCKEALGENALFFQDQVDLNSNQVDAIGKFPFKEPQNGLEFESKEAAYSFYREYARSVGFGITIKASRRSKKSGKFIDIKIVCSRFGSKRESSTAVNPRPCTKTDCKASMHMKKKLDGNWIIYNFVKDHNHEICPDDFFRGRSKQTNNVACQKKGMQLALDEGDMQLMIEYLVSMQCENPNFFYAIDLDQNRHLRTVFWVDSKGRLDYQNFHDIVLIDTFYLKNRYKIPFVPFVGVNHHFQYILLGCALVGEETVSAFIWLMRAWLKAMGNLPPKVIITDQEQCLKEAVVEVFPDKRHCFCLSQILCKITKNLDYIIDQNNNFMEKFDKCVHNSCSHEQFEKRWWKLINRFELEDDECVQSLYEDRKKWVPTYMRDVSLAGLSTTVRSESISSSFDKYICVDSTFKEFIEQHKVFSTDSFEMEAKADSETRQKKPALRSLSPFEKQLSTIYTFVIFGKFQLEILGMMSCHLQKETEDRASVTFLVDDFEKQKKFIVSWNEADLDVCCSCCLFQYKGFLCRHAILVLQKSGITNIPSRYILKRWAKDAKANRFAGDISTRTSNRVQRFNDLCRRAIILSELGSLSEDTYRVASQALEEVYKQCVNANNSAGSTLEPNKMALNVFDVEEKNYGCHRAKPTKKRKSFNKRECSDSERINIKMLDDFQKREQRNSREPNFDNCYISQQDMQTVDLDSRASTLDGYYGAQQNVLEDAQMNSVSVVHDGYYSSQLAILGLGQMPSVSSRGPHYGMQHSIQGPIVGYGSHFETI 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00031 812 Pfam SWIM zinc finger 548 573 IPR007527 GO:0008270
Cca07g00031 812 Pfam MULE transposase domain 259 350 IPR018289 -
Cca07g00031 812 Pfam FAR1 DNA-binding domain 94 179 IPR004330 -
Cca07g00031 812 PANTHER PROTEIN FAR1-RELATED SEQUENCE 2 36 761 - -
Cca07g00031 812 ProSiteProfiles Zinc finger SWIM-type profile. 537 575 IPR007527 GO:0008270
Cca07g00031 812 SMART 26again6 550 577 IPR006564 GO:0008270
Cca07g00031 812 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 761 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00031 Cca-Chr7 467179 471645 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca07g00031 MULE 4.1e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00031 - - gmx:100802811 1371.68