Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00029 ATGGTGACTGGTGAACACAAAGTGGCAATGCAATTGGCAAGCCCAACAACGAAGCAACCTACAGTCTCCGATCAGAGCCTGTCCAAGACTCCTCGCTCCAAAAGTGGGAGAAGTAGGAGGAAAAACACTCGTTCCTTTCCATTTCCATCTCTCAACATGCGCGTATACGACATCCACACCTCCAAAACCATTAGTCCTTACTACAAGGGTCTCACTGACCAATCCCTTGCTATTGTCGATACAAACACCATCCCTCACTGCCATGCGCCTCATGCTCCTATTCCCACTCATCTCCTCTCTAGCCCATATTATAAAGGTCTTACTGATTATTCCAAGGTTATCGATCCTTGGACCCCTGGCCCTCATCATATTCCTGCAAACAACTCCTTTTCCTACTCTTCTAGTCCTTACTATAGAGGCCTTCTCACTGATTACTCCCTTGTGCTTCATGCACCACCTGTTGAACCTCCTCCTGCTATCAAAACTTTCAAAGTCATCATGGACAAACTCTCAGCACAAAACACTTCTTCATCGCCCCCAAAGATCATCAACGCTGACTTTACTTTGAACGACTACTTGGTTATCGAGGATCATGATGGCTTTCTCTTTCAACAACTCCAGCCTGTCAGGGCTACTGCGCCATTACAAGAAATTGCTCACCAAACAACTCTGGATCAAGAGAAGCCATTGAGAGAGAAGGCGTCAGAGGCAAATGAGGTTGGAAGTGTGTTAGAAGAGGAAGCAAAGAAAATGGTTTTGGAGGAGATGGAATGGATGACAAAGGATCCCAATGAGAATGTTCAGATGGTGATTGAAGAGAAGCCATTGAGGGAGATTGTATTTGAGCAAGCAAGTGATAAGGTTGAGGGTGTGTTAGATGAAACAATTTTGGAGGAAATGAAGTTGATGAGTGGTGCTGATGTTATTGAAGAGAAGCCATTGAGGGAGAGAGTATCAGAAACAAGTGATGAAGTAGAGATGGATGTGTGGAAGGTGGAGGAACTCAAAGAGCATGAAAAGGAGAAGGCCTTGTTTGTTTCTGAACCAACAGTTGTTGCATCAGAATCACAATGTAAAGAGGGTGGAAATGCGTACGAGTATACATGGGCAACCAAATACCAGCCCACCACCTTGGAAGAATTCATCTGCAACAAAGATAAAGCACTTCAGCTCAAAGCAATGGTAAAAGAAGGGTGTGGCTGCAGTCATTTTATATTTGAAGGACCACCATGTGTAGGAAAGAGATCCATGATACGGGCTATGCTTCGAGAGGTATTTGGCGCCGACAAGGTGCAGGTCATAGAAGAATGTAGAAACTTTGACTTGAAGGGAGAAATGGTTAACAAACTCCAAGTTCGCATGAAGAAATCACTCCATCATGTTGAGGTGAATCTCTCAGAGACAAAGGGATATGAAAAGCATGTAATTGTTGATTTATTCAAGGAAACATATGGCCAGGTCATAAACAACTCGCAGCCTTGTTGTCCAGAAAATTGCAAAGCAATCATTTTGTATGAGGCCGAGAAGCTTTCCATAGAATCCTTGTTGTATATTAAGTGGCTACTAGAAAAGTACAAGGGGTGTAATAAGGTATTCTTTTGTTGCTCTGATGAATCAAAGCTCCAACCTGTCAAACCACTTTGCATCACTGTTCGGCTTTCATCACCATCAAGCCAAGAGCTTGTTGAGATTTTGGAATATATTGGAAAAGAAGAAGGAATAAAATTATCGCGAGACTTAGTCCATAAGATAATTTTGAGGTCCAAAAACAATCTACGTCAAGCCATTCGTTCGTTGGAGGCCAGTTGCCGAAACAAGGATGCTCTCAAAGATGACGATTTAATTCTAACTGGGTGGGAAGAAGATATTTTGAATATTGCCCAGGAAATAATCCAAGAGCAAAGTCCACGACAGCTGTACGTCATTCGTGGAAAGCTCCAAAGTCTTATGATTCATGATGTTCCTCCTGACTTTATTTACAAGTTTTTGGTAACAGAGTTAACAAACCGAGTTGATGAACCGCTGTGGGCAGGGGTTGCCCAACTCGACAAGGAATTCAATAGAGCTGGAGAAATCAAATTTGAAAGTATGAAGCAGTTGGGTCATGCACGAAAACAAGCCGAATCGGATGAGAACAATGACTCAACCATAAAGAATGAATTAACTTACTCAAAAGTCGAAGAGTTTATAGCGAAATTCATGAGCTGGTACAAGTACAAGAAGCACGAGAAACACATCGGAGGAGCATAG 2250 0.4267 MVTGEHKVAMQLASPTTKQPTVSDQSLSKTPRSKSGRSRRKNTRSFPFPSLNMRVYDIHTSKTISPYYKGLTDQSLAIVDTNTIPHCHAPHAPIPTHLLSSPYYKGLTDYSKVIDPWTPGPHHIPANNSFSYSSSPYYRGLLTDYSLVLHAPPVEPPPAIKTFKVIMDKLSAQNTSSSPPKIINADFTLNDYLVIEDHDGFLFQQLQPVRATAPLQEIAHQTTLDQEKPLREKASEANEVGSVLEEEAKKMVLEEMEWMTKDPNENVQMVIEEKPLREIVFEQASDKVEGVLDETILEEMKLMSGADVIEEKPLRERVSETSDEVEMDVWKVEELKEHEKEKALFVSEPTVVASESQCKEGGNAYEYTWATKYQPTTLEEFICNKDKALQLKAMVKEGCGCSHFIFEGPPCVGKRSMIRAMLREVFGADKVQVIEECRNFDLKGEMVNKLQVRMKKSLHHVEVNLSETKGYEKHVIVDLFKETYGQVINNSQPCCPENCKAIILYEAEKLSIESLLYIKWLLEKYKGCNKVFFCCSDESKLQPVKPLCITVRLSSPSSQELVEILEYIGKEEGIKLSRDLVHKIILRSKNNLRQAIRSLEASCRNKDALKDDDLILTGWEEDILNIAQEIIQEQSPRQLYVIRGKLQSLMIHDVPPDFIYKFLVTELTNRVDEPLWAGVAQLDKEFNRAGEIKFESMKQLGHARKQAESDENNDSTIKNELTYSKVEEFIAKFMSWYKYKKHEKHIGGA 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00029 749 Gene3D - 557 617 - -
Cca07g00029 749 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 125 739 - -
Cca07g00029 749 SUPERFAMILY post-AAA+ oligomerization domain-like 618 684 IPR008921 GO:0003677|GO:0006260
Cca07g00029 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 613 IPR027417 -
Cca07g00029 749 MobiDBLite consensus disorder prediction 10 32 - -
Cca07g00029 749 MobiDBLite consensus disorder prediction 1 47 - -
Cca07g00029 749 Gene3D - 367 556 IPR027417 -
Cca07g00029 749 Gene3D - 618 737 - -
Cca07g00029 749 PANTHER OS10G0574500 PROTEIN 125 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00029 Cca-Chr7 418669 429709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00029 369 738 Core DNA Replication Machinery Family AT5G27740 29.211 1.26e-48 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00029 K10756 - gmx:102664389 866.3