Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00022 ATGTTAATACAAACTTCTCTCCTTAGTTCAGTAGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGACCGGATGCCTAGTGGTGAAACTTGGCAGGTGTGTCTGAATTGCAATAAGTACCCTCTTGATCGGTGTAGAAAAGCTGAACCAGTGGAAGAAGATAGAAGGAATGGTGATGATCCTTATAGCTCAAACTGTCTAATTAGCTTTGGTCGGCTGTCAACTGCTAGTATAATGACAGAAAACACTGCACCTAATATGGTATACAGTAGAAAGAGGCTTCGTAAGGACTCAGATTTCAAGCAAGGACCAACTAACGGCCAAGCAAGTGCAAACTGCCCTTCAGTCATAAGTTCCGCTGCTCATGTATCATCAGCAAAGGATCAGCCTGCTGGTTTTCAAGTTACGAGTGAAATTGAAATGGTTAAAGATCCTACCGTGTCTTCAGTCTTATTTGATGGAGTAGCCAAAGATAGCAAACATAAAATCGTAGGTATTGACAGTGTAAATGATAGTTGCTCCTCTTCAAAGCCAAATATGGAAACTGAAATGGATGAAACTGGTGAATGCTCCTCTTCCAGTGTTTCTGTCATGGATGCCACAAGGGAAGAAGTAACAGAAAAGGATTTCTGCATTAATATTTTAAGAAGCCATGGACTTCTTAGAGAAGATTTTCTTGTAGATAATGTGGCTTCTGGGGAAGATGGTGTCACCACTGGTAATAGCTGCTGTTCCAGGTCATGCAAAATATGTGGCCATTTAGACAGTTCATTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCCGTCTTGCTACAATTCACGATTGAAAAAATTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAAAAAAGGCAGAAAATTCTCAAGGACGAGACAATTATCAGATCACCAGGCATCCACAATGAATTTGGCAAATGCAGAACTGCCTCAGTTAAGGCTGAATTAAATCCCATACTGTTGATGCTGAGAGACACTAAGCCATATACAACTAGTGTGCGGGTTGGTAAAGGTTTTCAAGCAGAAGTTCTTGACTGGTCAGGCCCCATAAAAAGTGATGAAGATGTACTTCCTGAACCATCGGAAATTAAAGATTCAGAATTTTATAGACTGCCGGGAGAGAATATGAGAAGTCCGATTAGACTTAGCTCTGTTGGTAATTGGATTCAATGTCAGGAGGTTATAGATAGAGAAAACGGAACTGTATGTGGAAAATGGCGCAGGGCCCCTCTTTTTCAAGAGGAAACTGATAAGTGGGAGTGCTTTTGTGCTGTTCATTGGGATCCATCCCATGCTGATTGTGCCGTACCTCAGGAGCTTGAAACAGATCAAGTACTGAAGCAACTGAAGTATATAGAAATGCTACGGCCGCGACTTGCTGCTGCTAAACGGAAAAAATCAGATAGCAGAAATAATAGTGTTTGA 1473 0.4067 MLIQTSLLSSVEAGLCYVSDDGKDVLCDRMPSGETWQVCLNCNKYPLDRCRKAEPVEEDRRNGDDPYSSNCLISFGRLSTASIMTENTAPNMVYSRKRLRKDSDFKQGPTNGQASANCPSVISSAAHVSSAKDQPAGFQVTSEIEMVKDPTVSSVLFDGVAKDSKHKIVGIDSVNDSCSSSKPNMETEMDETGECSSSSVSVMDATREEVTEKDFCINILRSHGLLREDFLVDNVASGEDGVTTGNSCCSRSCKICGHLDSSLNMLLCDHCEDAYHPSCYNSRLKKLPIDEWFCHSCLKKRQKILKDETIIRSPGIHNEFGKCRTASVKAELNPILLMLRDTKPYTTSVRVGKGFQAEVLDWSGPIKSDEDVLPEPSEIKDSEFYRLPGENMRSPIRLSSVGNWIQCQEVIDRENGTVCGKWRRAPLFQEETDKWECFCAVHWDPSHADCAVPQELETDQVLKQLKYIEMLRPRLAAAKRKKSDSRNNSV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00022 490 Gene3D - 402 467 - -
Cca07g00022 490 ProSiteProfiles Zinc finger PHD-type profile. 250 300 IPR019787 -
Cca07g00022 490 ProSiteProfiles Zinc finger CW-type profile. 398 458 IPR011124 GO:0008270
Cca07g00022 490 PANTHER REMODELING AND SPACING FACTOR 1 21 482 - -
Cca07g00022 490 ProSitePatterns Zinc finger PHD-type signature. 253 297 IPR019786 -
Cca07g00022 490 SMART PHD_3 252 298 IPR001965 -
Cca07g00022 490 MobiDBLite consensus disorder prediction 179 200 - -
Cca07g00022 490 Pfam PHD-finger 253 299 IPR019787 -
Cca07g00022 490 PANTHER HISTONE ACETYLTRANSFERASE 21 482 - -
Cca07g00022 490 SUPERFAMILY FYVE/PHD zinc finger 250 303 IPR011011 -
Cca07g00022 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 315 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00022 253 345 C2H2 Transcription Factor Family AT3G01460 33.333 2.25e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca07g00022 PHD 4.7e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00022 - - gmx:100813057 844.728