Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00013 ATGTCCAATTCGAAAATTGTTGGCTCTGCTGTCACTCCATTTTCAGATTCAATTCTTCTTCTTCGGTGCAGCCAAATGGAGAGCTCAAAGGAAAACCGCCTCCCGCTCATACCCTCTTCAAATTTTCAAGGCGGTTCAAGAATGGAGAGTAAGAAGCCCATTCATCACCGGCTGCCTCTTGGCAACATCAATCTCAATGTTATGCCAAACAAAAACCCTTCTCATGTCAACAAACCAGATCTTTCCCGCAAGTGTACAGCACACCCAGTTCTGCATCACCACCCTCTGCCCCAAGAAACTAAGAAACAGAACCTGTTGGCCCCGACACCGAGTTACCAGTTAGATCATGACATCATAGATATCGATGATGATGAGGATGCCGGTGACAATGCAGTTCCAGTATTTGTGAAGCATACTGAAGCAATGCTCGACGAAATTGACAGGATTGAGGAAGTTGAAATGGAAGACGTGGAGGAACCTGTTATGGACATCGATGCCTGTGATAGGAAAGATCCACTTGCTGTTGTTGAGTACATAGATGATCTCTACCGTTTCTACAAGGATACCGAGAATTCTAGCTGCGTCTCTCCAAATTATATGATTAGTCAACTTGACATTAATGAGAGGATGAGGGCCATTCTTATTGACTGGCTTATTGAGGTTCACTACAAATTTGAACTTTTGGAGGAGACATTGTTCCTTACCGTCAATCTCATAGACAGGTTCTTGGAGCTTCAGGCAGTGATCAGAAAGAAACTTCAGTTAGTTGGGGTAACAGCTATGCTAATAGCTTGTAAGTACGAGGAGGTCTCAGTCCCTACCGTTGAGGATTTTATTCTGATAACAGACAAGGCGTATACAAGAAATGAAGTTTTAGATATGGAGAAATTAATGATGAACATCCTGCAATTCAAGTTGTCTGTGCCAACTCCATACGTGTTCATGAGAAGATATCTCAAGGCAGCTCATTCTGATAAAAAGCTGGAGCTCTTGTCCTTCTTCTTGGTCGAGCTTTGCTTGGTGGAATGCAAAATGCTGAAGTTTTCACCATCTTTGCTAGCTGCTGCAGCCATATACACAGCTCAATGTAGTCTGTACCAGTTTAAGCAATGGACTAAGACCAGCGAGTGGTATACTGCTTACTCGGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGGAAGAGCAGCTTCTAGAATGCTCAAGGCTGATGGTTACTTTCCATCGAAAAGCTGGATCAGGATAATGGTGTATAGAAACAGGCCTGTTTCTACTGGATAA 1395 0.39 MSNSKIVGSAVTPFSDSILLLRCSQMESSKENRLPLIPSSNFQGGSRMESKKPIHHRLPLGNINLNVMPNKNPSHVNKPDLSRKCTAHPVLHHHPLPQETKKQNLLAPTPSYQLDHDIIDIDDDEDAGDNAVPVFVKHTEAMLDEIDRIEEVEMEDVEEPVMDIDACDRKDPLAVVEYIDDLYRFYKDTENSSCVSPNYMISQLDINERMRAILIDWLIEVHYKFELLEETLFLTVNLIDRFLELQAVIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRNEVLDMEKLMMNILQFKLSVPTPYVFMRRYLKAAHSDKKLELLSFFLVELCLVECKMLKFSPSLLAAAAIYTAQCSLYQFKQWTKTSEWYTAYSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGRAASRMLKADGYFPSKSWIRIMVYRNRPVSTG 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00013 464 CDD CYCLIN 307 383 IPR013763 -
Cca07g00013 464 Pfam Cyclin, N-terminal domain 181 307 IPR006671 -
Cca07g00013 464 Gene3D - 181 384 - -
Cca07g00013 464 PANTHER CYCLINS 82 383 IPR039361 -
Cca07g00013 464 Gene3D - 195 307 - -
Cca07g00013 464 SUPERFAMILY Cyclin-like 308 384 IPR036915 -
Cca07g00013 464 PANTHER CYCLIN-B2-3-RELATED 82 383 - -
Cca07g00013 464 Pfam Cyclin, C-terminal domain 309 383 IPR004367 -
Cca07g00013 464 SMART cyclin_7 216 300 IPR013763 -
Cca07g00013 464 SMART cyclin_7 313 395 IPR013763 -
Cca07g00013 464 SUPERFAMILY Cyclin-like 170 306 IPR036915 -
Cca07g00013 464 SMART Cyclin_C_2 309 414 IPR004367 -
Cca07g00013 464 CDD CYCLIN 210 299 IPR013763 -
Cca07g00013 464 ProSitePatterns Cyclins signature. 211 242 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00013 Cca-Chr7 268598 274692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00013 26 383 Core Cell Cycle Gene Families AT1G20610 55.814 8.12e-139 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00013 K21777 - gmx:100812029 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00013 07 268598 274692 Cca07g00013 07 268598 274692 ECH