Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00011 ATGGAATACGAGGGGTTGGTGCAGAATGGTGCATATGGGAGCTTGTCAGAGTTTTTTGCCCCAGAAACGGATTTGATTGATGAGCTGTTTGTAGAAGGATGCTGGGTGGAAACAAGGGTTAATTCAAAGTCAGAGTGGAGCATGGAAGCGCAAATAGAAGAATCAGAAGTGGGGAAGAGATGGTGGATTGGACCAAGGGCGAATCCAGGGCCATCTACGTCTGTGCAAGAGAGATTAGTGGTTGCCGTTGGGTACTTAAAAGAATACGCCATGAATTCCATTCAGGTATGGGTGCCCGCACGGACTACACGTGCTCAGCCTCCATACGCCCTTGGCCTTGATTATGGGGACGCAACAAGAGGTTTTGAGTTTGAGGATGAGTGGAGTCCCAATCCCAACATTCGGTTCTTCAGAAGTGACGAGCAATACGATGTACGTGCTGGATCTCTCGCCCTTCCTGTCTTTGAGAGAGGCACTGCCATATGTCTTGGTTTTCTCCAGATTCTGATGCCCAACAACCCCAACCTCCACAATGTTTGTCATGCCCTTCAGGGTTTTGACGAGTTATACGAAGGTGCATTAAATGAGATAGTACAAGTTTTGACGTGTGTGTGCAAGGCGCATAAGTTGCCTTTGGGTCTGACATGGGCTCCGTGCATCCAACAAGGAAAGAGTGGATGCGGGCATTTAAAGGAACTATTGGGATTCCAGGAAGCGTGCTCTCAGTGTCACCTTTTGGGACAAGGACAAGGGCAAGGAGTAGTCGGGACAGCTTTCACAACCACCAAACCTTGTTTTGCAAACGACATGAGTAAGGCTCTGCCTCTGGCACACCATGCTAACATGTTTGGCTTGCACGCTGCTGTCGCCATTCCACTCCGGAGTGTCTCCGCTGATTTCGTGTTAGAGTTTTTCCTCCCAAGGGACTGCCAAGACTACAAGCACATTCTCAATTCATTGTCCATGCTAGTGCAGCAAGCTTGCCGGAGTTTGCATGTTGTGACTGTGGAGGAGGAATTTCTGTTGCCTGTTGCTCATGAAATGGAATCATCATCATGGATTGCACATATGATGGAGGCCCAGACCCAACAGAATGGGAAAGGTGTGTCAGTGTCCTTGGAATACCTGCAAGAGCCAAAACAAGAGTTCAAAGTGACAACCAACGGCAACTGCAATGAAAATGAAGAATCCTATGGTGGGCGCCGGGGTGGCAGGAAATCAGGCGACAAGAGACGAACCAAGGCAGAGAAGACTATCAGCTTGCCGCTTCTTCGACAGTACTTTGCGGGAAGCCTCAAAGACGCTGCCAAGAGTATTGGCGTTTGTCCTACCACTCTAAAAAGGATATGCAGACAACATGGAATTACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACACTTTAAGGAAGCTTCAAGTTGTCATCGACTCCGTCCAGGGTGCTCAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTTCCAGAGTTGAGCTCTACCACTGCCACTGCTAGTGCTGTTTCTCAATCATCCAAGAATGTCAATAACAATAACGATACTTCTGAAAATAACCAAGGACAACTTGGAGCTACTACTTTCAAATCCCCAACGTCATCTTGCAATGCATCCATCCAACTCCAAGCCCCCCATCCTATTCAATGCCTTGAGAGATTTGCAGATGGAGATTGCAAGACGTTTCAATCTAAACGAGAATATTAA 1725 0.4759 MEYEGLVQNGAYGSLSEFFAPETDLIDELFVEGCWVETRVNSKSEWSMEAQIEESEVGKRWWIGPRANPGPSTSVQERLVVAVGYLKEYAMNSIQVWVPARTTRAQPPYALGLDYGDATRGFEFEDEWSPNPNIRFFRSDEQYDVRAGSLALPVFERGTAICLGFLQILMPNNPNLHNVCHALQGFDELYEGALNEIVQVLTCVCKAHKLPLGLTWAPCIQQGKSGCGHLKELLGFQEACSQCHLLGQGQGQGVVGTAFTTTKPCFANDMSKALPLAHHANMFGLHAAVAIPLRSVSADFVLEFFLPRDCQDYKHILNSLSMLVQQACRSLHVVTVEEEFLLPVAHEMESSSWIAHMMEAQTQQNGKGVSVSLEYLQEPKQEFKVTTNGNCNENEESYGGRRGGRKSGDKRRTKAEKTISLPLLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHTLRKLQVVIDSVQGAQGAIQIGSFYTSFPELSSTTATASAVSQSSKNVNNNNDTSENNQGQLGATTFKSPTSSCNASIQLQAPHPIQCLERFADGDCKTFQSKREY 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00011 574 MobiDBLite consensus disorder prediction 398 414 - -
Cca07g00011 574 ProSiteProfiles RWP-RK domain profile. 405 486 IPR003035 -
Cca07g00011 574 PANTHER PROTEIN NLP2 43 544 - -
Cca07g00011 574 MobiDBLite consensus disorder prediction 386 414 - -
Cca07g00011 574 PANTHER PROTEIN NLP8 43 544 IPR045012 GO:0003700
Cca07g00011 574 Pfam RWP-RK domain 419 466 IPR003035 -
Cca07g00011 574 MobiDBLite consensus disorder prediction 510 534 - -
Cca07g00011 574 Coils Coil 574 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00011 Cca-Chr7 223852 226740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00011 52 523 NLP Transcription Factor Family AT4G35270 42.247 1.37e-132 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca07g00011 RWP-RK 6.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00011 - - ccaj:109816936 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00011 07 223852 226740 Cca07g00011 07 223852 226740 ECH