Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00002 ATGAGTTCACAGACGCAGCTTCCGTGTGACAGCGAAGGCGTGTGTATGGTCTGCAAGGCCGTGCCTGGGGAGGAGGAGAGGCTCCTATGCGTCACGTGCGATACTCCTTGGCATGTGCCTTGCCTGTCTGCCGCTCCACCCACCCTCGCAGCCACGGTTGGGTGGTCGTGTCCCGATTGTTCTATTCTGGACTCTGAGGTTCCGCCGGCTCCGGCTCCCGTCCGCAACGAGCTCGTGGCTGCAATGTTGGCGGTTGAGAAGGACGCGTCTCTCACCCAAGACCAGAAAGCCAGAAAACGCCAAGAACTCATGACTGGGGAGGCTCCCGTAGAAGACGAGGCGGAGAAACCGAATAAAGTGTCCGTATCTGATATTCTCACTCGATCTCTCAACTGCTCCATCTGTATCCAGTTACCCGAGAGGCCTGTCACGACTCCGTGTGGGCACAGCTTCTGTTTGAAGTGCTTTGAGAAATGGGTCCGACAAGGGAAGAGGAGCTGTGCCAAGTGCCGGCAGGCTATCCCGGTGAAGATGGCAAGCCAGCCCCGTATCAATTCTGCCCTCGTATTTGCAATACGCATGGCCAGGGCGGCATCGAACAACAATGGCGGCAGCGTAGGTGTGCGGAATGTTAACCATTTCCGGCACAATCAAGATAGACCTGATGAGCCGTTTACTACTGAACGTGCACAGAGGAATGGTCGTGCAAACGCGGCTAGTGGGAAAATATTCGTCACCGTGCCTACGGACCATTTTGGTCCTATCACCGCAGAGAATGACCCTGTGCGAAATCAGGGTCTGTTGGTTGGTGAAAGTTGGAGAGACAGACTCGAATGCAGGCAATGGGGTGCTCACTTCGTCCCTGTCGGTGGCATTGCTGGACAATCAGACCGCGGTGCCCAATCGGTTGTTCTTTCTGGTGGTTATGTGGACGACGAGGATCACGGAGAGTGGTTTCTCTACACCGGAAGTGGTGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGAGTCACTCTTTTGACCAGAAGTTTGAGAAGTACAACCGTGCCCTTCAAGTTAGTTGCCTCCAGGGTTATCCAGTTCGAGTTGTCAGGTCAGCACCCTTTCTTTCACCTGCTTCATACTCTAATTCGTGCATTCACTCACCTCATACGGACACAGGATATAATACTGCGATTGTAATTTATAACTCAAAGGTGATAGGGGTAGAAAGAGTGGGGTAA 1227 0.5338 MSSQTQLPCDSEGVCMVCKAVPGEEERLLCVTCDTPWHVPCLSAAPPTLAATVGWSCPDCSILDSEVPPAPAPVRNELVAAMLAVEKDASLTQDQKARKRQELMTGEAPVEDEAEKPNKVSVSDILTRSLNCSICIQLPERPVTTPCGHSFCLKCFEKWVRQGKRSCAKCRQAIPVKMASQPRINSALVFAIRMARAASNNNGGSVGVRNVNHFRHNQDRPDEPFTTERAQRNGRANAASGKIFVTVPTDHFGPITAENDPVRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQKFEKYNRALQVSCLQGYPVRVVRSAPFLSPASYSNSCIHSPHTDTGYNTAIVIYNSKVIGVERVG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00002 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 367 IPR045134 -
Cca07g00002 408 SMART ring_2 132 170 IPR001841 -
Cca07g00002 408 SMART ring_2 15 60 IPR001841 -
Cca07g00002 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 195 IPR013083 -
Cca07g00002 408 SUPERFAMILY RING/U-box 125 178 - -
Cca07g00002 408 Pfam SAD/SRA domain 265 376 IPR003105 -
Cca07g00002 408 SUPERFAMILY PUA domain-like 236 371 IPR015947 -
Cca07g00002 408 SUPERFAMILY FYVE/PHD zinc finger 4 67 IPR011011 -
Cca07g00002 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Cca07g00002 408 SMART PHD_3 14 61 IPR001965 -
Cca07g00002 408 ProSiteProfiles YDG domain profile. 262 408 IPR003105 -
Cca07g00002 408 CDD RING-HC 132 170 - -
Cca07g00002 408 Gene3D - 233 388 IPR036987 -
Cca07g00002 408 SMART G9a_1 257 391 IPR003105 -
Cca07g00002 408 Pfam Zinc finger, C3HC4 type (RING finger) 132 170 IPR018957 GO:0046872
Cca07g00002 408 ProSiteProfiles Zinc finger RING-type profile. 132 171 IPR001841 -
Cca07g00002 408 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Cca07g00002 408 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00002 Cca-Chr7 13246 14804 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00002 1 367 C2H2 Transcription Factor Family AT5G39550 58.133 8.15e-145 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00002 K10638 - gmx:100801535 661.373