Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02070 atgcagctgactcgTTTGCTTTTGAGACACAAATCCTGCTGGTCGCTTCTCTGCACGCACAGCCGCACTGCCACAGCTTCACAGCCACACCGCTGCACCACGCATAGTCGCACCACCGCACCGTCGCACTATCGCATTGCCGCATCGCTGCACCGCCACCTCGTCGCACCACCACGCCTTTGCTTCAGCGGTCAACGCCCGGATTCCGAAGTCTATACCAACCACAAGAGGCGGAGAGAGAGTTTTGGCCTTAGCAAGAAGGATAACGCCATTTGTTTTTGGTTTGGAATCAATCAACTGGGCTTTGAGATGGTGAAGGAGACCGAATACTACGACGTGCTGGGTGTCAGTCCTACGGCTTCCGAAGCCGAGATTAAGAAGGCTTATTACATGAAGGCAAGGCAAGTGCATCCAGATAAAAACCCAAATGATCCTCTTGCTGCGCAAAATTTTCAGGCAAGAATGTTATGTGAGGCTTACCAAGTTCTGAGTGACCCAGCTCAAAGGCAAGCTTATGATGCTCATGGAAAATCAGGAATTTCAACTGAAGGAATTATTGATCCTGCAGCAATCTTTGCCATGCTATTTGGTAGTGAGCTTTTTGAGGAATATATAGGCCAATTAGCCATGGCATCAATGGCTTCAATGGACATTTTTACTGAAGGGGAGCAATTTGATACTAAAAAGTTGCAAGAGAAAATGAGGGTTGTTCAGAAGGAGAGAGAAGAAAAGCTTGCGGAGATACTGAAAAATAGGCTGAACCAATATGTCCAAGGAAACAAAGAGGAGTTTGTTAATCATGCAGAAGCTGAAGTGGCCTGGCTTTCCAATGCAGCTTATGGGGTTGATATGTTGAATACCATTGGCTACATATACGCAAGGCAGGCAGCAAAAGAGCTAGGCAAGAAAGCAATTTATTTGGGTGTGCCTTTTATTGCTGAGTGGTTTAGAAACAAAGGGCACTCTATTAAATCTCAAGTTACAGCAGCAACAGGGGCAATTGCTTTAATCCAACTGCAGGAGGATATGAAAAAACAACTCAGCTCAGAAGGGGACTATACTGAAGAAGAGCTTGAAGAATACATGCAATCTCACAAGAAATTAATGATTGACTCTTTGTGGAAGCTCAATGTTCTTCAAGACAACAGTGCCAGGAAAGAGGAACTCCGTGCTCGAGCTAAAGGGTTGAAAACTCTTGGTAAAATCTTCCAGAGGGTTAAGTCAGCCAATGGTAACGAGAATGAAAGCATACCAAATAAGGAAGTACACAAGTTGAATGGAAGTGAAACTAGCAACGATGCTTGTTCTCCTAGTACATCACCCAAATCTTCAAGTCCTGATTTTTCAACTCATGCTGTATTTGTATCCCAGAGTCCCTATGTGGAGGCCCCGCAGTTTGCTGGAATGCAATTTGACTATAACTTTCCTAGGCCAACCGCCCCCCCAGGTGCCCAGAGACCTACTCCAACCAGCAAGGATCGAGTTTGA 1488 0.4503 MQLTRLLLRHKSCWSLLCTHSRTATASQPHRCTTHSRTTAPSHYRIAASLHRHLVAPPRLCFSGQRPDSEVYTNHKRRRESFGLSKKDNAICFWFGINQLGFEMVKETEYYDVLGVSPTASEAEIKKAYYMKARQVHPDKNPNDPLAAQNFQARMLCEAYQVLSDPAQRQAYDAHGKSGISTEGIIDPAAIFAMLFGSELFEEYIGQLAMASMASMDIFTEGEQFDTKKLQEKMRVVQKEREEKLAEILKNRLNQYVQGNKEEFVNHAEAEVAWLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFIAEWFRNKGHSIKSQVTAATGAIALIQLQEDMKKQLSSEGDYTEEELEEYMQSHKKLMIDSLWKLNVLQDNSARKEELRARAKGLKTLGKIFQRVKSANGNENESIPNKEVHKLNGSETSNDACSPSTSPKSSSPDFSTHAVFVSQSPYVEAPQFAGMQFDYNFPRPTAPPGAQRPTPTSKDRV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02070 495 Pfam X-domain of DnaJ-containing 238 415 IPR026894 -
Cca06g02070 495 CDD DnaJ 109 165 IPR001623 -
Cca06g02070 495 MobiDBLite consensus disorder prediction 471 495 - -
Cca06g02070 495 ProSiteProfiles dnaJ domain profile. 109 176 IPR001623 -
Cca06g02070 495 MobiDBLite consensus disorder prediction 410 449 - -
Cca06g02070 495 Coils Coil 227 247 - -
Cca06g02070 495 Pfam DnaJ domain 109 173 IPR001623 -
Cca06g02070 495 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 104 467 - -
Cca06g02070 495 Gene3D DnaJ domain 102 187 IPR036869 -
Cca06g02070 495 PRINTS DnaJ domain signature 168 187 IPR001623 -
Cca06g02070 495 PRINTS DnaJ domain signature 129 144 IPR001623 -
Cca06g02070 495 PRINTS DnaJ domain signature 111 129 IPR001623 -
Cca06g02070 495 PRINTS DnaJ domain signature 148 168 IPR001623 -
Cca06g02070 495 SMART dnaj_3 108 168 IPR001623 -
Cca06g02070 495 SUPERFAMILY Chaperone J-domain 104 206 IPR036869 -
Cca06g02070 495 MobiDBLite consensus disorder prediction 423 449 - -
Cca06g02070 495 PANTHER CHAPERONE PROTEIN DNAJ 10-LIKE ISOFORM X1 104 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02070 Cca-Chr6 35956825 35965159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02070 110 175 C2H2 Transcription Factor Family AT1G74250 42.254 2.47e-07 51.6