Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02062 ATGCTTCCATCTCATGTAACCGGAGGCTTTTGGCTTGGTCTTCCCACAAAATTCTGTCAGCTGCATATGCCCAAGGTTGATACTATCTTTTCTTTGGAGGATGAAAGTGGGCAACTTTATGAAACCAAATATCTTACTCAAAAGGCAGGCTTAAGTGGTGGATGGAGGGGGTTTTCCATGGCTCATAACTTACTTGAGATGGATGTTTTAATATTTCACTTGGTCCAACCTTCCAAGTTTAAGGTGTACATCATAAGATCTCAGGGATCGGATGAAGTGGATGGTGCTCTGGGTCTTCTTAAGTTAGATGAATGTAGAAAACAAACGGATGAAGTGAATGGTGTTCTCGATACTACTGAAGGAAATGATCATAAGAATAGCGAGATGGTTTTTGGTGCTAATGTATCTCAATTAGATGAGGTTGAAAATACTAGTGAAGATCTAGTCTCTGGAATTAAATTTTCAGAATCTGTTGTCAGTTTCAAGCAAGTGAATGGTGTGGAGAATTTCAGGATTGTGGTGAATGGTTTGGTTATTGATTCAGAGTTATCCCAATATGATAGAGGCAAGTATTATGAGCTGTGTTTGAGCCAGGGGTCGTTTCTTCATGAGCAGCTTTTTGAGGGTCTTAACTCTAAACTGGCGGCTGGAATAATCTCTGAGACCATTAACATTGCAGATGCCATTAAAGGCAGCAACCTTACAACCTCTCCAGATGGTTTTGCCATATGGGACAAAACTCTGAAAGCCTTTGGGACCATGGGTATGAACGTCGGCTTCTTGCTCAATCGGCTAGACCAGCTCATGAAACTAGCTTTGAAATTGATGAGGTACAAAGAGGTAATACTTGAAAGGGACCGTGCTGAAGAGGAGTTGAAAGCTCTGGAAGCAAAACTAGTGCAAGTAAAACAAACCATAAATAGACTTGACCAAGAGACCGACATACAACGTATGCACCCTGATAGGCTCAAGACTATGTTCCAACAATTGGCTCATGCTCCTTGGTAA 1008 0.4137 MLPSHVTGGFWLGLPTKFCQLHMPKVDTIFSLEDESGQLYETKYLTQKAGLSGGWRGFSMAHNLLEMDVLIFHLVQPSKFKVYIIRSQGSDEVDGALGLLKLDECRKQTDEVNGVLDTTEGNDHKNSEMVFGANVSQLDEVENTSEDLVSGIKFSESVVSFKQVNGVENFRIVVNGLVIDSELSQYDRGKYYELCLSQGSFLHEQLFEGLNSKLAAGIISETINIADAIKGSNLTTSPDGFAIWDKTLKAFGTMGMNVGFLLNRLDQLMKLALKLMRYKEVILERDRAEEELKALEAKLVQVKQTINRLDQETDIQRMHPDRLKTMFQQLAHAPW 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02062 335 SUPERFAMILY DNA-binding pseudobarrel domain 1 87 IPR015300 -
Cca06g02062 335 Pfam B3 DNA binding domain 1 87 IPR003340 GO:0003677
Cca06g02062 335 Gene3D - 1 89 IPR015300 -
Cca06g02062 335 SMART B3_2 1 88 IPR003340 GO:0003677
Cca06g02062 335 Coils Coil 278 312 - -
Cca06g02062 335 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 267 IPR044837 -
Cca06g02062 335 ProSiteProfiles B3 DNA-binding domain profile. 1 88 IPR003340 GO:0003677
Cca06g02062 335 CDD B3_DNA 1 86 IPR003340 GO:0003677
Cca06g02062 335 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 1 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02062 Cca-Chr6 35874839 35877118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02062 1 86 B3 DNA Binding Superfamily AT3G19184 60.465 2.28e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca06g02062 B3 1.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02062 - - ccaj:109816480 651.358