Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02061 ATGGAGGAAGAGGAAGACGAAGGGGTTTGGTGTTCTTCTGATTCGGGCGACGATGATGTCGAAGAACGGAAATCGCAGAATGTGGATGCCCTGATCAGGGGCAACCTCATCGTGAAGAGACAATCGTTGCTACCGCGAGTTCTATCAGTTTCGCAAGGAGCCGCTGTTTGTAGAAAACCCTTTAAACCTCCGTGCTCTAAATCTGATGCTTCTGGTTACAATCAAGACCTCACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCCTCTGCTCTTCCTAGACCTGCGTTGGAGGAGTTGAAATTGAACGTACCAGTCTCGGTCACCGAAAGCCATGTCGAGGAGGTCAAACTCTCTTTGCCCCCGGGTATTGATCCTCTTGTATTGTGGCAATGGCACCCTCAAGACTCCGACAATGGCCCTCCCGAAGCTAATTTCACCACCATAACAGTTGACCCCTTTCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCTCGGGGCTGTGTACCTCACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTTTAGGGAAGACATTGCAGTCGATCACATTACTATATACTCTAATTTGTCAAGGGTTTGATGGCAAGCCGATGGTTCGAAAGGCCATCATTGTGACTCCGACCAGCCTTGTCAGCAATTGGGAAGCCGAAATCAACAAGTGGGTTGGAGAAAGAGTTCGTCTTGTTGCTCTATGTGAAAGCACGAGAGAAGATGTTATCTCTGGAATTGACAATTTTATAAGTCCACAAAGCAATTTACAGGTGATATTTCTTGAATTTTGTTTGAATAGCTTGAACTACATATGTACTAACATAAAATCCCCCAATTTGCAGGTGCTCATTGTTTCATATGAGACATTTCGAATGCATTCGTCAAAGTTTAGCTCTAGTGGCTCATGTGATCTTCTCATATGTGACGAGGCTCACAGACTGAAAAATGATCAGACCATAACAAACCGGGCATTGGCAGCTCTCCCCTGCAAACGTAGAATTTTGTTGTCAGGAACTCCTTTGCAAAATGACTTAGAAGAATTCTTTGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGATATTGCGCATTTTCGACGTTACTATGAGGCACCGATTATTTGTGGAAGAGAACCTGCTGCCCCCCCAGAAGAGAAGAAGCTAGGTGCTGAACGCTCTGCTGAATTAAGTGTTAATGTTAATCGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGCCACCTAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCTATATAAACATTTTATACAATCCAAAAATGTTAAGCGGGCAATTAGCGAAGAACGGAAGCAATCAAAGATTTTGGCTTACATTACAGCTCTCAAAAAGTTGTGCAATCATCCAAAGCTTATCTATGATACCATACGAAATGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGTATCCGATTCTTCCCTCCTGAAATGTTATCTGGAAGGTCTGGCTCATGGACGGGAGGGCATGGAGCGTGGGTTGAGCTATCCGGTAAAATGCATGTCTTAGCAAGATTACTAGCTCATTTACGCCAGAGAACAAATGACCGCATTGTCCTTGTCTCAAACTACACTCAGACCCTCGATCTTTTTTCTCAATTGTGTCGGGAACGAAGGTACCCTCACTTGAGGCTTGATGGCACTACATCAATCAGTAAAAGGCAGAAAATGGTCAACTGCTTTAATGATCCATCCAAGGACGAATTTGTTTTTCTCTTGAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTATTTGATCCTGATTGGAATCCCGCAAATGATAAACAAGCTGCTGCAAGAGTATGGAGGGATGGACAGAAGAAAAGAGTTTACATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGGGCAAACTGATAGCCTTGTGGCACAGGCTAACTTTCTTTCTACAGAGGATCTTCGTGATTTGTTTACTTTTCATGCGAACATCAAGTCAGAGATTCATGAAAAGATGCAATGCAGTCGGTGTCAAACATTCGACGGCCTTCAAAGCACTGAGGGTCAATCAACAACAACAGATAGTGAATCTGATGGAGAAACCTCTGATATAGGTGGATTTGCAGAAACTGCTGGCTGCTTACAGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAGCCCTTTGGAGGAGGATTTAGGAAGCTGGGGCCATCATTTTTTCCCAACTTCTGTACCAGATGCTATCCTACAGGCTTCAGCCGGTGATGAGGTGACTTTTGTCTTCTCAAACCAAGTTAACGGACGACTGGTACCCATTGAGTCCAACATCAGTCCCAAGGTACAGCAAAAGGAATTACTCAAGTCAAAGCAGAACGGTAACATATTACCTCTGAAAAGATCATGCCCTGCTAATATCAATGATGATAATTTTGAATAA 2604 0.4343 MEEEEDEGVWCSSDSGDDDVEERKSQNVDALIRGNLIVKRQSLLPRVLSVSQGAAVCRKPFKPPCSKSDASGYNQDLTRRLSARKRFVPWGSSSALPRPALEELKLNVPVSVTESHVEEVKLSLPPGIDPLVLWQWHPQDSDNGPPEANFTTITVDPFLVRFLRPHQREGVQFMFDCVSGLCTSPNIHGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKAIIVTPTSLVSNWEAEINKWVGERVRLVALCESTREDVISGIDNFISPQSNLQVIFLEFCLNSLNYICTNIKSPNLQVLIVSYETFRMHSSKFSSSGSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPAAPPEEKKLGAERSAELSVNVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRAISEERKQSKILAYITALKKLCNHPKLIYDTIRNGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRQRTNDRIVLVSNYTQTLDLFSQLCRERRYPHLRLDGTTSISKRQKMVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQGQTDSLVAQANFLSTEDLRDLFTFHANIKSEIHEKMQCSRCQTFDGLQSTEGQSTTTDSESDGETSDIGGFAETAGCLQNLKRSEKQVGSPLEEDLGSWGHHFFPTSVPDAILQASAGDEVTFVFSNQVNGRLVPIESNISPKVQQKELLKSKQNGNILPLKRSCPANINDDNFE 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02061 867 CDD SF2_C_SNF 539 667 - -
Cca06g02061 867 Gene3D - 428 736 IPR027417 -
Cca06g02061 867 SMART helicmild6 572 656 IPR001650 -
Cca06g02061 867 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 41 812 - -
Cca06g02061 867 MobiDBLite consensus disorder prediction 740 756 - -
Cca06g02061 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 428 IPR027417 -
Cca06g02061 867 MobiDBLite consensus disorder prediction 1 15 - -
Cca06g02061 867 Pfam SNF2-related domain 166 496 IPR000330 GO:0005524|GO:0140658
Cca06g02061 867 PANTHER SNF2/RAD54 FAMILY MEMBER 41 812 - -
Cca06g02061 867 Gene3D - 137 427 IPR038718 -
Cca06g02061 867 MobiDBLite consensus disorder prediction 1 23 - -
Cca06g02061 867 Gene3D - 450 719 - -
Cca06g02061 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 432 816 IPR027417 -
Cca06g02061 867 CDD DEXHc_RAD54 163 428 - -
Cca06g02061 867 Pfam Helicase conserved C-terminal domain 547 655 IPR001650 -
Cca06g02061 867 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 545 706 IPR001650 -
Cca06g02061 867 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 378 IPR014001 -
Cca06g02061 867 SMART ultradead3 159 386 IPR014001 -
Cca06g02061 867 MobiDBLite consensus disorder prediction 740 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02061 Cca-Chr6 35846272 35869239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02061 536 714 RAD5 or RAD16-like Gene Family AT5G43530 36.111 7.27e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca06g02061 SNF2_N 6.9e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02061 K10875 - gmx:100781631 1466.06