Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02058 ATGGTCTCTTTGAACAGGCTGTCTGGAGAGAGAAATATGGACAGCACGTACATGTGCGCTTTATTATTGTTATTAAATGGTTTATTGCTTCAGTGGTTGCAAAGGGTGGCTGGCAATGGTTACGGCTACGGTTATTGGCCCCCAGCAATGTGTCCGCCACCCCCTCCTCCCCCAGTAATGTGTCCACCGCCCCCACCAGTGACACGGCTGAGGAGAGCTGGCAAAGTGCTTCGAAAATTCAGAGTTGGGATCGAAGACCCAAGTGGATATACGAGTAACTGGAAGGGTAGGGAGATTTGTAAGTACAAGGGGGTGCGATGTGGCACATATCCAAAGGCAAAGGAGAGAGCAGTTGCGGGAATAGACCTGAATGGAGCTGGGCTGTCTGGGAAAAACGGTACAGCGCTGAGGCTCTCGGGCATCTTGGGTGCCATACCAGAGCTCACATTCTTCCACGTCAACTCCAACGGCTTCACCGGTGCCATCCCAACTGACATCACCAAGTACAAGTATTTCTTCGAGTTAGACCTTAGTAACAACAAGCTGGAAGGTGAGTTTCCCAAGGAAGTGGTGGAGTCCAAGCAGCTGGTGTTCCTTGACCTCAGGTTCAACCATCTCTGCGGCCCAATCCCAGCACAAGTCTTTCAGCTTCCTTTCCTGGATGTCCTATTCATCAACAACAATAAATTCAATGGCATTCTCCCCGATAACTTTGGGTCCACACCAGCCAGGTACCTCACTTTTGCCAACAACCAACTCACGGGTCCAATCCCCTCAAGCATTGGCCAAGCTTCCAAAACCCTCACCGAAGTGCTCTTCTTGGGCAACCACTTTGAGGGCTGCTTGCCCTATCAAATCGGGTACCTCAAGAAGGCCACCGTCTTCGACGTGAGCATAAACTTGTTAACGGGTCCCATCCCTCACTCCTTTGGGTGCTTGGAAAGCATCCGGTACCTTAACCTGGAGCAGAACCAGTTTTACGGAGAAGTTCCCGAGATGGTGTGTCAGCTTCCGGGCCTCCGCAACAAAGGCAACTTCTCCTTATCCTACAACTATTTCACCCAGGTTGGTCCTGCATGCAGGACCCTCATCAAGAACAATGTTCTTGACGTCAGCTACAACTGCATCCTCGGCCTTCCAAATCAAAGGCCTCACGGAGAATGCACTCATTTTTTCTCCCAGCTCAAGCCCTGCCCAAATCCCAAGTATCTCCATTACGTCCCTTGTAAAGGATACTACCCGCAGATCTACACCACCACCCCCTCTCCTCCGCCTCCAATCACTTACAACTCTCTCATTCCCCATCGCTAG 1311 0.5111 MVSLNRLSGERNMDSTYMCALLLLLNGLLLQWLQRVAGNGYGYGYWPPAMCPPPPPPPVMCPPPPPVTRLRRAGKVLRKFRVGIEDPSGYTSNWKGREICKYKGVRCGTYPKAKERAVAGIDLNGAGLSGKNGTALRLSGILGAIPELTFFHVNSNGFTGAIPTDITKYKYFFELDLSNNKLEGEFPKEVVESKQLVFLDLRFNHLCGPIPAQVFQLPFLDVLFINNNKFNGILPDNFGSTPARYLTFANNQLTGPIPSSIGQASKTLTEVLFLGNHFEGCLPYQIGYLKKATVFDVSINLLTGPIPHSFGCLESIRYLNLEQNQFYGEVPEMVCQLPGLRNKGNFSLSYNYFTQVGPACRTLIKNNVLDVSYNCILGLPNQRPHGECTHFFSQLKPCPNPKYLHYVPCKGYYPQIYTTTPSPPPPITYNSLIPHR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02058 436 SUPERFAMILY L domain-like 76 380 - -
Cca06g02058 436 Gene3D Ribonuclease Inhibitor 243 405 IPR032675 -
Cca06g02058 436 Pfam Leucine rich repeat N-terminal domain 75 107 IPR013210 -
Cca06g02058 436 PANTHER BNAC05G26270D PROTEIN 49 417 - -
Cca06g02058 436 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 49 417 - -
Cca06g02058 436 Gene3D Ribonuclease Inhibitor 72 242 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02058 Cca-Chr6 35808448 35809976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02058 69 398 Trihelix Transcription Factor Family AT1G12040 41.441 9.88e-79 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02058 - - gmx:100781083 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02058 06 35808448 35809976 Cca06g02058 06 35808448 35809976 ECH