Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02042 ATGGAGGCTGCTGATCAGATTTCCAAAGAATGGAGTTCTCTTAGTGGAGTGTACACGGCAGAGGAAGCTAACTTTATGAACCAGTTGCTTGGTCACTGTTCAGTCCCGGAACAGCTCTCTGAGAGTTTCAACTTGGGAACTCAATCTGCATTTTGGCCTGACCATGAATCCACAGAAAACAATAACACCTACTTTCTACCACAAGTACCAAATACAAATTCTGTGTGTTTTTTACAACGGAGTAGTTCCAGTGCAGATAGTATCAAATATATCTCTCCCGCAACAAATGTTGGCAACTACTCCAAGGATTTTTCCTTACAAGGCAATGATGGCAAACTGATGGGTGGAAACACTGACTTAGAGTTAGGTCTTGACACAAGGAAAGAGGGTCTTGCTGAGATGAATTTGCAGGCTCACATGGAACGTCAAATACTAGATTCTGAATCAGGAAAAAGATCTAGGAGCTCAATCGAGGTCCCAAAGAACAAGAGAAATGTTAAATCTAAGAAGAATCCAAAACCAGCTTCTGTAAGTCCAAACCCTCAGGGTCAGACCTTAAGCAGTTGCTGTTCAGATGATGATTCCAACGCTTCGCAGGAGCTACATGGAGGGACATCATCAAGTTTGAACCTGAAGGATTCTACAGCTCTGAAGCTAAGTGGAAAATCACGATCTAATAGAGAGCCTGCAACTGATCCACAGAGCGCGTATGCAAGAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAACCTTGTCCCCAATGGAACTAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTGAGCTCTGACGATCTGTGGATGTACGCTCCTATTGCTTACAATGGAATGAACATTGGCCTGGAACTTAACATCAACCTTACCAATCAACTAAAGAAATGCATAGCATAG 963 0.4185 MEAADQISKEWSSLSGVYTAEEANFMNQLLGHCSVPEQLSESFNLGTQSAFWPDHESTENNNTYFLPQVPNTNSVCFLQRSSSSADSIKYISPATNVGNYSKDFSLQGNDGKLMGGNTDLELGLDTRKEGLAEMNLQAHMERQILDSESGKRSRSSIEVPKNKRNVKSKKNPKPASVSPNPQGQTLSSCCSDDDSNASQELHGGTSSSLNLKDSTALKLSGKSRSNREPATDPQSAYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLELNINLTNQLKKCIA 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02042 320 MobiDBLite consensus disorder prediction 144 165 - -
Cca06g02042 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 295 IPR036638 GO:0046983
Cca06g02042 320 MobiDBLite consensus disorder prediction 171 232 - -
Cca06g02042 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 278 IPR011598 GO:0046983
Cca06g02042 320 MobiDBLite consensus disorder prediction 141 239 - -
Cca06g02042 320 Pfam Helix-loop-helix DNA-binding domain 239 279 IPR011598 GO:0046983
Cca06g02042 320 Gene3D - 230 292 IPR036638 GO:0046983
Cca06g02042 320 SMART finulus 235 284 IPR011598 GO:0046983
Cca06g02042 320 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 309 - -
Cca06g02042 320 CDD bHLH_AtIND_like 230 292 - -
Cca06g02042 320 PANTHER TRANSCRIPTION FACTOR BHLH54 8 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02042 Cca-Chr6 35656536 35658129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02042 10 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 42.693 2.67e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g02042 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02042 - - var:108319891 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02042 06 35656536 35658129 Cca06g02042 06 35656536 35658129 ECH
Cca06g02042 06 35656536 35658129 Cca02g02499 02 46158135 46159906 PCT