Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02034 ATGAGGGGAGGGGAGGAGCGATCGACGGGGATTCGGAAGAAGGGAAGCGGAGTGAGATCATGGCTTGTGGTGGAGGGCAGAGGAGAGAGCGAGGTGGTGGAGGCAGGGAAGCACGCAATCATGAGGCGGACGGGGCTCCCAGCCCGTGACCTGAGAATATTGGACCCACTCCTCTCCTACCCATCCACCCTTCTGGGCCGAGAGAGGGCCATCGTCATAAACTTGGAGCACATAAAGGCCATCATAACAGCCCACGAGGTCCTCCTCCTCAACTCCCGCGACCCCTCCGTTACCCCCTTCGTCCAGGAGCTCCAGGCCCGCATCCTCCGCCACCACCAGGCCTCCACCTCCCCCAACCCCGACGCCATCAAGATTCTCCCCTTCGAGTTCGTTGCCCTCGAAGCTTGCCTTGAGGCCGCCTGCACCGTCTTGGAAAACGAGGCCAAGACGCTCGAGCAGGAGGCCCACCCCGCCTTGGATAAGCTCACTTCCAAGATCAGTACTCTCAATCTCGAGCGTGTTCGTCAGATTAAGAGCCGCTTAGTCGCCATCACTGGTCGTGTTCAGAAGGTTAGGGATGAATTGGAGCACTTGCTCGATGACGACGACGATATGGCTGAGATGTACCTCACTCACAAATTATCTGATCACGACTTCGATACCTCTTCTGCTTCTGCCGAGGAAAATCTTCTTCAGCCTCAGCCTGATCCTGATTTAGATGACACCGACAGGACTGCTCCTGAAATTTCCTTTGATCATAATGCTCTCCACTCTGGAGACCCTATGGATGGCTTTGGCGCCTCTAACGTGCTTGGTAGGGACAGCCATGGAACCCGCGGGAGCGCTACCTTCAGTGCCGTCACCAAGCATCTTGATGTCGAGGAGCTTGAGATGCTCTTGGAGGCATACTTTGTGCAGATTGATGGCACCTTGAACAAGCTCTCTACGCTGAGGGAGTACGTGGATGACACAGAGGATTATATCAACATCATGCTGGATGACAAACAGAACCATCTCCTCCAAATGGGAGTTATGTTGACCACAGCAACTCTGGTAGTGAGTGCCTTTGTTGTTGTGGCCGGTATTTTTGGCATGAATATTCATATTGAGCTATTTGACCAAGAAAAATCTGGGATGCCAGAATTCCTCTGGACTGTTGGCGGTAGCACTGCAGGGACCATATTCTTGTATGTGGTTGCCATTGCCTGGTGTAAGCACAAACGCTTGCTAGAGTAG 1236 0.538 MRGGEERSTGIRKKGSGVRSWLVVEGRGESEVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTLLGRERAIVINLEHIKAIITAHEVLLLNSRDPSVTPFVQELQARILRHHQASTSPNPDAIKILPFEFVALEACLEAACTVLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDDDMAEMYLTHKLSDHDFDTSSASAEENLLQPQPDPDLDDTDRTAPEISFDHNALHSGDPMDGFGASNVLGRDSHGTRGSATFSAVTKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFDQEKSGMPEFLWTVGGSTAGTIFLYVVAIAWCKHKRLLE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02034 411 MobiDBLite consensus disorder prediction 222 246 - -
Cca06g02034 411 Coils Coil 134 154 - -
Cca06g02034 411 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 121 411 - -
Cca06g02034 411 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 9 117 - -
Cca06g02034 411 Pfam CorA-like Mg2+ transporter protein 294 400 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cca06g02034 411 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 9 117 IPR039204 -
Cca06g02034 411 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 121 411 IPR039204 -
Cca06g02034 411 CDD Mrs2_Mfm1p-like 21 409 IPR039204 -
Cca06g02034 411 Gene3D - 7 92 - -
Cca06g02034 411 Gene3D Magnesium transport protein CorA, transmembrane region 94 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02034 Cca-Chr6 35595198 35597443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02034 20 411 MRS2 Gene Family AT3G19640 64.091 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02034 - - gmx:100819578 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02034 06 35595198 35597443 Cca06g02034 06 35595198 35597443 ECH