Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02024 ATGATTAAGAGAAAGTGTAGCTCAGGTCGTCAAAAGATTCCAATTGAGAAAATACCAAAAAAGAGTCATTTACAAGTGACATTCTCAAAGCGTCGTTCGGGGCTTTTCAAAAAGGCTAGTGAGTTATGCACACTTTGTGGAGTGGAAATTGCAATCATTGTTTTCTCCCCTGCTGATAAAGCCTTCTCTTTTGGCCACCCAGAAGTTGAATCCATAATCGATTCTTATCTAACTCCAAACTCTTCCCTAGAGTCTAGTAGTGGTCACCAGCTTGTTGAGGTACACCGCAATGCAAATATTGGTAACCTCAACATGCAACTCACCCAAATTCTTAATCAGTTGGAAATTGAGAAAAAGCAAGGAGAAGAGTTAGATCGAGTGTGGAAAACTAGACAGAGTAAGTTTTGGTGGGAGATCCCTGTTCCTCAACTTGGATTGCATGAGTTACAACATTTAATGTTTTCAATGGAGGAGTTGAAGAAGAATGTTGCAAAATATGCTACCCAAATGTTGATGGACCAGAACAATGTTCCTGCACCGGTTAATGGGCCTGGGCCTGCGCCTAACGGATTTGGGCCTTTTGATGCCTTTGGCCACAAACCTCCTCAGATTTACGCCAATGTTAATTCTTCCACTCTTATTAATCCCTCTGCTTTCAACTTTCGATATTGA 672 0.4122 MIKRKCSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIIDSYLTPNSSLESSSGHQLVEVHRNANIGNLNMQLTQILNQLEIEKKQGEELDRVWKTRQSKFWWEIPVPQLGLHELQHLMFSMEELKKNVAKYATQMLMDQNNVPAPVNGPGPAPNGFGPFDAFGHKPPQIYANVNSSTLINPSAFNFRY 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02024 223 CDD MADS_MEF2_like 9 85 IPR033896 GO:0000977|GO:0045944
Cca06g02024 223 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Cca06g02024 223 SUPERFAMILY SRF-like 9 80 IPR036879 GO:0003677|GO:0046983
Cca06g02024 223 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Cca06g02024 223 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Cca06g02024 223 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Cca06g02024 223 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Cca06g02024 223 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Cca06g02024 223 Coils Coil 104 124 - -
Cca06g02024 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Cca06g02024 223 Gene3D - 89 179 - -
Cca06g02024 223 PANTHER MADS BOX PROTEIN 7 178 - -
Cca06g02024 223 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02024 Cca-Chr6 35467446 35468117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02024 1 221 Type I MADS-box Gene Family AT5G60440 45.291 6.06e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca06g02024 SRF-TF 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02024 - - qsu:112040126 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02024 06 35467446 35468117 Cca06g02024 06 35467446 35468117 ECH
Cca06g02024 06 35467446 35468117 Cca02g02464 02 45769217 45769909 PCT