Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02022 ATGACCATGGCATCCTTGAAGCCTGTGTTGCTGATGATCTTCCTCAGCTTCTTCAACTTGGAGACGTGTAAAGCACAGGTGTACCTGTACCATAACTGTTCAGGCAGCAACACCACCGCCAACAGCGCCTACCAactaaacacccgaacccttttcacttccttaacatccaacgcttcctccgccgaattctcgaacgccaccgtgggagcgtcctcctccgacaccgtgcgcgggctgttcatgtgcaggggcgacatgtccgccgcgccgtgccagcagtgcgtggtgaacgcgacgcggcgtctcctctccgaatgcgctttggcgaaacagggagtgatatggtacgacgagtgcatggtacggtactccaaccggtccttcttctcgacggtggacacgcggccacgccttggtctcctgaacaccgccaacatcaccaaccaggaatcgttcatgagcttgcttttcaaaaccataaacgaaaccgctgACGAGGCTTCCAACTTCTCGGTGGGCGTGAAGAAATACGCGACGAAGCAAGCCAACATTTCGGCGTTTCAGACGCTGTATTGTTTGGCTCAGTGCACGCAAGATCTGTCTCGGGAAGACTGCAGAAGGTGTTTGAGTGGTGTGATTGGAGACCTTCCTTGGTGCTGTCAGGGGAAGCAGGGAGGAAGGGTTCTCTATCCCAGCTGCAATGTTAGGTACGAGCTTTACCCTTTCTATCACTCCACTGCTTCTCCGCCAGCGCCTTCACCCTCGCCATCGCTGCTTCTTCCTCCTCCACCTTCCTCAAATTCCGGAGGAAGCAGTGGGATTTCAGCTGGGACGATTGTTGCAATTGTGGTTCCAATAGCGGTTGCTGTGCTTATATTTATAGTGGGAATTTGTTTCTTAAGCAGAAGAGCAAGGAAGAAGCAGGGCCCTGTCAAGGAAGGGAAAACTGCGTATGACATCAGCACTGTCGAGTCCTTGCAATTCGATTTCGGAACAATTGAAGCGGCCACGAATAAATTCTCTGTGGATAATAAGTTGGGCGAAGGTGGATTTGGTGAGGTTTACAAGGGTACTCTTTCGAGTGGACAAGAAatagctgtcaagagactctccaaaagttctggacaaggtggggaagaatttaagatggaagtggaagtggttgccaagcttcaacacagaaatttggttaggcttctcgggttttgcttgcaaggagaagagaagatacttgtttatgaatatgtgcccaacAAAAGTCTAGACTATATTCTCTTTGATCATGAAAGGCAAAGGGAGTTGGATTGGGCAAGGCGTTATAAGATTATTGGAGGGATTGCTCGAGGTATTCAATATCTTCATGAAGACTCCAGGCTTAGAATTATACACCGTGATCTTAAAGCTAGCAACGTATTATTAGACAGAGATATGAATCCAAAAATCTCTGATTTTGGTATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAACACTAGCAGAATTGTAGGGACTTATGGTTACATGGCTCCTGAGTATGCTATGCATGGAGAGTTTTCTGTTAAGTCTGATGTGTACAGTTTTGGAGTCCTCCTTATGGAGATTATAAGTGGCAAGAAGAATAGCTCTTTCTATCAAACGGATGGTGCTGAGGATCTAATGAGCTATGCTTGGCAACTTTGGAAGGATGGAGCACATTTGGAACTGGTGGACCCCATATTAAGAGAATCCTGTAATCAGAATGAAGTTATCAGAAGCATCCATATTGGTTTGTTGTGTGTCCAAGAAGATCCAGATGACAGACCTACAATGGCAACAATAGTTCTCATGCTAGATAGTAATACTGTTACTCTACCAACTCCTAAGCGTCCTGCATTTTTTGTCCACAGTGGAACTGATACAAACATGCCAAAGATGCTGCAATTTGATCAATCCACAACAAAGTCAATACCAATGCTAAACCCTCTTGGCTTCGCCttctgttccattctttactttgcttgcttcctcttctgctctttcagGTGGCGTGCCCTTGCTATTTGGAGGGGGGGAAATTTGGAGTTTCTAGTTAACTTAAGCATGATAAAACGTTCACCAAGTAGGAACCAAAGATCCAGAGGCATCAAGGTAAAACATGTTCTGCAGATTACTCTATTGCTTGGTGTTTGTTTCTGGTTGATCTATCAGGTTAAGCACTCTCATGATAAGAAAAAGGAATTTGATGAGAATGACACAGAAGTGTCAGTCGGAACTCAGACTTCGAAACTTGGAAGAAAAGATCTTCGTCTGGGTAAGGATGAAGTGAATCAAAATGAAAAGCCtgatgaagaggaggaagatgagaatgttgtagaggatgatgaggataagcatgaACACAGTGAACATGAAGGAGGAAATGAGCACGAATCTGTGGAAAAAGATGACAAACATGGAGTGAGAGGAGGGGGAGATGAACAAGAGGTAGATGAAAGGGGGGGAGGAGATGATGAGATAGATGAAAATGATCAAGAACAATCAGCAGTAGATACTGATCATGATGAGGAGTTCATGGATGAAGACAAAGGGAGAGAAGAGGAGAGCGATGAGAAAGACAAAGAGAACATCAAGGATGAGGAAAAGGATGGTTCAGTTACCAACCACAACAGTCATGAAGCTCGGGAGGAAAATTACAATGGGGATGATGCTTCTAGCGCTGTGTCTCATGATACTGAAGCTGTACTGCCTGGTGAGCCTTCTTCCAATGCAACTTCTGGTAAAGAAACTGGAAGCAACGGTTTGTCCAACATTGTGGATAGCTCACATCTAGAAAATATTACCACAACATTTTCGGGCAGTCATTCAGAAGCTGGCAGTAATCTGACAGTAGTGATCCCTGGAGGTAGCAATAACTGGACAGGAACCAGTGCCAATAATTCATCTGAACCTAATAAAATGACAGAAGGATTAGAGCAGGGTGGCAATATGCTCTCTGAGGAAAACCTGCTAGGTTTAAACCTAACAGTCCCAGCTGAAACAGAAAAGCGAGATGTAGCTGCAGGTGAATCTTCTAATCTAGAGGGTGGTGAGTTAGAGAAGACAAGAAGATTTGTAGCACCAAAAGAAACCGAGAACAGCGGCAACACTGAGTCGAGTGAAACAAACAAGACTCAGAATATTTCATATATGAATGAAAACATTGATGCCACTAAGGATGAGATAAAGGGTGACCCGGCAACGGATGAAACTTCCGACTCAGTTGAACACCGTGACTTTGATTCTTTAGATTCCCACATCCTTAAGAATGTGGCAGAGACTAAAAACATGGTCTTTTTGTTCTCGAGCTCCAGTGTCGTCACTCCATCACCTGCATTCGCTGGCCCTGTGACCACTTCACACACAGCCAGCCTGAGAAATCCCTATTTCTACAAGATAAAGATAGTGAATGCTGTTGCCAATTGGGTTTGCATTTTTTAA 3462 0.3599 MTMASLKPVLLMIFLSFFNLETCKAQVYLYHNCSGSNTTANSAYQLNTRTLFTSLTSNASSAEFSNATVGASSSDTVRGLFMCRGDMSAAPCQQCVVNATRRLLSECALAKQGVIWYDECMVRYSNRSFFSTVDTRPRLGLLNTANITNQESFMSLLFKTINETADEASNFSVGVKKYATKQANISAFQTLYCLAQCTQDLSREDCRRCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYHSTASPPAPSPSPSLLLPPPPSSNSGGSSGISAGTIVAIVVPIAVAVLIFIVGICFLSRRARKKQGPVKEGKTAYDISTVESLQFDFGTIEAATNKFSVDNKLGEGGFGEVYKGTLSSGQEIAVKRLSKSSGQGGEEFKMEVEVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYILFDHERQRELDWARRYKIIGGIARGIQYLHEDSRLRIIHRDLKASNVLLDRDMNPKISDFGMARIFGVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLLMEIISGKKNSSFYQTDGAEDLMSYAWQLWKDGAHLELVDPILRESCNQNEVIRSIHIGLLCVQEDPDDRPTMATIVLMLDSNTVTLPTPKRPAFFVHSGTDTNMPKMLQFDQSTTKSIPMLNPLGFAFCSILYFACFLFCSFRWRALAIWRGGNLEFLVNLSMIKRSPSRNQRSRGIKVKHVLQITLLLGVCFWLIYQVKHSHDKKKEFDENDTEVSVGTQTSKLGRKDLRLGKDEVNQNEKPDEEEEDENVVEDDEDKHEHSEHEGGNEHESVEKDDKHGVRGGGDEQEVDERGGGDDEIDENDQEQSAVDTDHDEEFMDEDKGREEESDEKDKENIKDEEKDGSVTNHNSHEAREENYNGDDASSAVSHDTEAVLPGEPSSNATSGKETGSNGLSNIVDSSHLENITTTFSGSHSEAGSNLTVVIPGGSNNWTGTSANNSSEPNKMTEGLEQGGNMLSEENLLGLNLTVPAETEKRDVAAGESSNLEGGELEKTRRFVAPKETENSGNTESSETNKTQNISYMNENIDATKDEIKGDPATDETSDSVEHRDFDSLDSHILKNVAETKNMVFLFSSSSVVTPSPAFAGPVTTSHTASLRNPYFYKIKIVNAVANWVCIF 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02022 1153 Gene3D - 25 129 IPR038408 -
Cca06g02022 1153 Gene3D - 138 243 IPR038408 -
Cca06g02022 1153 MobiDBLite consensus disorder prediction 1036 1054 - -
Cca06g02022 1153 SMART serkin_6 341 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g02022 1153 ProSiteProfiles Protein kinase domain profile. 341 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g02022 1153 Pfam Salt stress response/antifungal 146 241 IPR002902 -
Cca06g02022 1153 Pfam Salt stress response/antifungal 33 126 IPR002902 -
Cca06g02022 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Cca06g02022 1153 SUPERFAMILY Protein kinase-like (PK-like) 326 639 IPR011009 -
Cca06g02022 1153 MobiDBLite consensus disorder prediction 825 858 - -
Cca06g02022 1153 MobiDBLite consensus disorder prediction 760 987 - -
Cca06g02022 1153 Gene3D Phosphorylase Kinase; domain 1 303 416 - -
Cca06g02022 1153 Gene3D Transferase(Phosphotransferase) domain 1 417 620 - -
Cca06g02022 1153 MobiDBLite consensus disorder prediction 859 894 - -
Cca06g02022 1153 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Cca06g02022 1153 MobiDBLite consensus disorder prediction 1008 1054 - -
Cca06g02022 1153 CDD STKc_IRAK 347 613 - -
Cca06g02022 1153 MobiDBLite consensus disorder prediction 789 824 - -
Cca06g02022 1153 MobiDBLite consensus disorder prediction 910 983 - -
Cca06g02022 1153 MobiDBLite consensus disorder prediction 774 788 - -
Cca06g02022 1153 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 643 - -
Cca06g02022 1153 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 9 643 - -
Cca06g02022 1153 ProSiteProfiles Gnk2-homologous domain profile. 135 243 IPR002902 -
Cca06g02022 1153 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Cca06g02022 1153 Pfam Protein tyrosine and serine/threonine kinase 343 610 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02022 Cca-Chr6 35450366 35459490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02022 10 653 Receptor kinase-like Gene Family AT4G05200 54.312 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca06g02022 PK_Tyr_Ser-Thr 5.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02022 - - gmx:100305391 1045.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02022 06 35450366 35459490 Cca06g02022 06 35450366 35459490 ECH