Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02020 ATGGTCAAAGATAGACTTTCGCCTATGCTTTCATTCATCATATTTGTATCTCTCAAGGGCGTTTCTGGAGCAGACCCCATTGATAGTTATTGTCCCAGTGAATTCCCATTATACACCTTCAATAGTTCATTCCATTACAACCTCAAACATGTTGTGGCGTTGATTTCCTCCAGCAAGGCTTCAAAGGAAGGTTTCTATGACACATCAATCGGAGAAGAGCCAGACAAAGTATGTGGACCATCACTGTGCAGAGGAGACATCACGAACTCCACAATTTGCCAACAATGTGTTGAGAAAGCGAGCCAAGATATAATGAATAGGTGCAGGAGTAAAACTGCGATAATATGGTATGAACTTTGCCAAGTGAGGTACTCCTTTCAGAACTTTAATGTCGTTGCTTACACTGGAAAGTATCCTGAGCAGAATGACGAGGAGAAGAATGTACCCGATCCTATCAAATTTAGGGAATATTTGACATATTTAATGAAGAATCTCTCGGAGGAGGCTTGTTTTGATCATGCTAAGAAAATGTTTGCTGCTGGGGAAATAGACTACAGTGGGAACAAGACAATTTATGGGTTAGTACAATGTACGAGGGACATGTCCCAAAGGGATTGCAGTAGTTGTTTGAGTTCTGCCTTCACGGAACTTACTGCATGCTGCTCCAACAGGGAAGGTGGGATTATTGTTAGCCGTACTTGCAATATCAGGTTCCAATCGTATCACTTCTTCAATGCTTCATCTGCATATCGCTTGATTTACCCCACTTCCCAAGGAAGGAAATGGAAACCCTGGATGATTGTGTTGACTACATGTGGCTCAATTTTAGTATTATCACTTCTTATTGGGCTGGGCACTGCTTGCATCCGACGAAAAAAACACATAAACAGAGATGGAGAAATGAATGAAAGAACGCTATTACGAGAGTTGTCTATCTCCAAGAATGTTGCAGTCACACAAGAAGGTGACTTGATTAGTTCCGATGAATTGTTCATGACTGTAGTTGCCCTTAAGGCAGCTACTAAGGGCTTTTCTGATACAAATAAGCTGGGACAAGGAAGCTTTGGTTCAGTGTACAAGGGTGTTCTACCAGATGGTACTGAAATAGCAGTTAAAAGATTATCGAGAAAATCTTGGCAAGGCGTAGCGGAATTAAAAAATGAGGTCATACTCATTGCCAAACTTCAACACAAGAATTTGGTGAGGCTCTTAGGCTGTGCTTTAGAGGGGGATGAAAAGCTGCTCGCATATGAATTCATGTCAAACAAAAGCCTTGATCAGTTTATCTTTGATCGAGCAAAACGTTCAAAACTTGATTGGAAGACATACCATGGCATTATCAATGGCATAGCCAGAGGACTACTTTACCTTCACGAGGAGTCTCGCCTTAAAATCATTCAGAGACTTGAAGCCAAAAAATGTGTTGTTGGATCACGAAATGTTGGCCAAAATATCAGATTTTGGCATGGCCAGGATATTTTCTGA 1485 0.4121 MVKDRLSPMLSFIIFVSLKGVSGADPIDSYCPSEFPLYTFNSSFHYNLKHVVALISSSKASKEGFYDTSIGEEPDKVCGPSLCRGDITNSTICQQCVEKASQDIMNRCRSKTAIIWYELCQVRYSFQNFNVVAYTGKYPEQNDEEKNVPDPIKFREYLTYLMKNLSEEACFDHAKKMFAAGEIDYSGNKTIYGLVQCTRDMSQRDCSSCLSSAFTELTACCSNREGGIIVSRTCNIRFQSYHFFNASSAYRLIYPTSQGRKWKPWMIVLTTCGSILVLSLLIGLGTACIRRKKHINRDGEMNERTLLRELSISKNVAVTQEGDLISSDELFMTVVALKAATKGFSDTNKLGQGSFGSVYKGVLPDGTEIAVKRLSRKSWQGVAELKNEVILIAKLQHKNLVRLLGCALEGDEKLLAYEFMSNKSLDQFIFDRAKRSKLDWKTYHGIINGIARGLLYLHEESRLKIIQRLEAKKCVVGSRNVGQNIRFWHGQDIF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02020 494 ProSiteProfiles Protein kinase domain profile. 344 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g02020 494 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Cca06g02020 494 SUPERFAMILY Protein kinase-like (PK-like) 330 465 IPR011009 -
Cca06g02020 494 Gene3D Transferase(Phosphotransferase) domain 1 420 476 - -
Cca06g02020 494 Gene3D - 137 243 IPR038408 -
Cca06g02020 494 Gene3D - 28 129 IPR038408 -
Cca06g02020 494 ProSiteProfiles Gnk2-homologous domain profile. 136 243 IPR002902 -
Cca06g02020 494 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 468 - -
Cca06g02020 494 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 468 - -
Cca06g02020 494 Pfam Salt stress response/antifungal 38 126 IPR002902 -
Cca06g02020 494 Pfam Salt stress response/antifungal 146 241 IPR002902 -
Cca06g02020 494 ProSiteProfiles Gnk2-homologous domain profile. 25 129 IPR002902 -
Cca06g02020 494 Pfam Protein tyrosine and serine/threonine kinase 347 479 IPR001245 GO:0004672|GO:0006468
Cca06g02020 494 Gene3D Phosphorylase Kinase; domain 1 307 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02020 Cca-Chr6 35445713 35448727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02020 9 468 Receptor kinase-like Gene Family AT4G05200 37.860 3.47e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca06g02020 PK_Tyr_Ser-Thr 6.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02020 - - gmx:102669229 700.664