Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02019 ATGGTTTCAATTTCAAAATCCATTCAATTCTTCCTTCTTTGTACTCTAGCTTTTTTTTCAGACGTTGCAATTGCCGATCCTCCATTTGAACATTGTTCCAGAACCAACAGTTATGCAAACCAAAGTTCCTTTCAGAAAAATCTAATCACCCTCCTTTCCTCTTTATCCTCCAATGCTTCAATCTCCAAATTCTATACTACTTCTCATGGGATTGCCCCAAATAGAGTTTATGGCCTCTACATGTGCCTCGGCTATATCACAAGCGGATCGTGTCAGGAATGCATCACCACGGCAACAGAAGACATTGTCACACTCTGTCCTCAAGCCAAAGAAGCAGTTGTATGGGAGGAGTTATGTCAATTACGTTATTCCAACAACAATTTCATGGGTAGGTTGAATGTCTCGGGGAACATTGCCTTAGATAATCGACAGAATATTTCAGAGCCTGAGAAATTTGTGTCTGTTGTGGATGACACACTGAGTAATCTAACCAAGGTAGCATCTTTTGATGTTTCTGCAAGCATGTATGCTACTGGAGAAGTCCCCTTTGAAGACCAAACAATATTTGCCTTAGTGCAGTGCACCAGAGATTTATCTGCCAATGATTGCAGTATGTGCCTGCAAAGTGCCATGAGAGATATAGCAGGTTGCTGCTATGCCTCCATTGGGGCAAGAGTTCTGAGCCTTAGTTGTTATTTGAGGTATGAATTTTATCCCTTTTATCATGGTGCGAATAATGGGGCATTAGGACCCCAGGATTCTTCAAATGGAAAAAAAGAAGACAAAAATCATTTGTGCAAAATATGGTGGATTACAGgtattgtagttggagtaggcattgtagttgtggtAGGCTTGGTGATAATATTTTTTACTTTCGGACAACACTTGGTCAGGAAAAATCAGCAAAGTAAAAATGCAATAGTTAATCATCAAATTAGTCTTAGATCTCTTCGAGTGGCTACCGATAATTTTTCTGATTTGAATAAGCTTGGACAAGGTGGCTTTGGCCCTGTTTACAAGGGGACACTTGGTGATGGCCAAGAAGTGGCCATCAAGAGGCTCTCAACTCACTCTGAACAAGGCTCAGAGGAATTCATAAACGAGGTTCTTCTGATAATGAAACTTCAACACAAAAATCTTGTAAAGCTTCTTGGATTTTGTGTAGATGGAGAAGAAAGGCTTCTTGTATACGAATTTTTACCCAATGGTAGTCTTGATATTGTACTCTTTGACACAACGCAACCTGCACGACTTGATTGGACCACACGCCTAGATATCATTTATGGAATAGCAAGTGGGATACTTTATCTTCATGAAAATTCTCGACTAAAAATAATTCAGAGACTTAAAAGCAAGTAA 1362 0.3862 MVSISKSIQFFLLCTLAFFSDVAIADPPFEHCSRTNSYANQSSFQKNLITLLSSLSSNASISKFYTTSHGIAPNRVYGLYMCLGYITSGSCQECITTATEDIVTLCPQAKEAVVWEELCQLRYSNNNFMGRLNVSGNIALDNRQNISEPEKFVSVVDDTLSNLTKVASFDVSASMYATGEVPFEDQTIFALVQCTRDLSANDCSMCLQSAMRDIAGCCYASIGARVLSLSCYLRYEFYPFYHGANNGALGPQDSSNGKKEDKNHLCKIWWITGIVVGVGIVVVVGLVIIFFTFGQHLVRKNQQSKNAIVNHQISLRSLRVATDNFSDLNKLGQGGFGPVYKGTLGDGQEVAIKRLSTHSEQGSEEFINEVLLIMKLQHKNLVKLLGFCVDGEERLLVYEFLPNGSLDIVLFDTTQPARLDWTTRLDIIYGIASGILYLHENSRLKIIQRLKSK 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02019 453 Pfam Protein tyrosine and serine/threonine kinase 329 442 IPR001245 GO:0004672|GO:0006468
Cca06g02019 453 Pfam Salt stress response/antifungal 144 237 IPR002902 -
Cca06g02019 453 Pfam Salt stress response/antifungal 32 125 IPR002902 -
Cca06g02019 453 Gene3D - 137 240 IPR038408 -
Cca06g02019 453 Gene3D - 28 128 IPR038408 -
Cca06g02019 453 Gene3D Phosphorylase Kinase; domain 1 292 400 - -
Cca06g02019 453 ProSiteProfiles Protein kinase domain profile. 325 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g02019 453 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 449 - -
Cca06g02019 453 ProSiteProfiles Gnk2-homologous domain profile. 26 128 IPR002902 -
Cca06g02019 453 Gene3D Transferase(Phosphotransferase) domain 1 401 450 - -
Cca06g02019 453 ProSiteProfiles Gnk2-homologous domain profile. 134 240 IPR002902 -
Cca06g02019 453 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 9 449 - -
Cca06g02019 453 SUPERFAMILY Protein kinase-like (PK-like) 306 444 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02019 Cca-Chr6 35436855 35440002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02019 25 449 Receptor kinase-like Gene Family AT4G05200 39.434 1.50e-98 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca06g02019 PK_Tyr_Ser-Thr 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02019 - - gmx:102669364 644.039