Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02013 ATGCCTAAGTTATTAAAGAAAGCTGACGTGGACGAAGAAAGTGGAAAGAGTCAAGAGCGTCTAGGTACATTGACTCCGTTACGGAACCGCTCACCTAACCAACGGATTCTAAATTTCGACGTCAGCTTCGGAACGTGGTTGGCGAAGAGGTCTAAGTCGGTTATCTCGCCATCTCCTATAAAATGGACCATACCATACCCTTCTTTCCTCcattcccaatttcacttattttcattctcattctTTCAAACCTTTCAAGATGCaaatcttcaccagcaacgtctgatcttcgccgggaagcagctcgaggatgggcggaccctcgccgactacaacatccagaaggagtcgaccctccacctggtcctccgtctccgtggtggcatgcagatattcgtcaaaaccctcaccggaaagaccatcacccttgaggtggagagttcagacaccattgacaatgtgaagggcaagattcaggacaaggagggaattcctccggaccagcagaggctgatctttgcagggaagcagttggaagacgggaggacccttgctgactacaatattcagaaggagtccacccttcaccttgtcctgcgTCTCCGTGGTGGCTTTTAA 618 0.1828 MPKLLKKADVDEESGKSQERLGTLTPLRNRSPNQRILNFDVSFGTWLAKRSKSVISPSPIKWTIPYPSFLHSQFHLFSFSFFQTFQDANLHQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKGKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02013 205 Pfam Ubiquitin family 131 202 IPR000626 GO:0005515
Cca06g02013 205 Pfam Ubiquitin family 84 126 IPR000626 GO:0005515
Cca06g02013 205 Gene3D - 129 205 - -
Cca06g02013 205 Gene3D - 82 128 - -
Cca06g02013 205 CDD Ubl_ubiquitin 129 204 - -
Cca06g02013 205 ProSiteProfiles Ubiquitin domain profile. 92 128 IPR000626 GO:0005515
Cca06g02013 205 PRINTS Ubiquitin signature 181 202 IPR019956 -
Cca06g02013 205 PRINTS Ubiquitin signature 139 159 IPR019956 -
Cca06g02013 205 PRINTS Ubiquitin signature 160 180 IPR019956 -
Cca06g02013 205 PANTHER UBIQUITIN 92 204 - -
Cca06g02013 205 PANTHER - 92 204 - -
Cca06g02013 205 SMART ubq_7 74 124 IPR000626 GO:0005515
Cca06g02013 205 SMART ubq_7 129 200 IPR000626 GO:0005515
Cca06g02013 205 ProSitePatterns Ubiquitin domain signature. 155 180 IPR019954 -
Cca06g02013 205 SUPERFAMILY Ubiquitin-like 86 128 IPR029071 -
Cca06g02013 205 SUPERFAMILY Ubiquitin-like 128 204 IPR029071 -
Cca06g02013 205 ProSiteProfiles Ubiquitin domain profile. 129 204 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02013 Cca-Chr6 35379426 35380712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02013 129 205 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 2.68e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02013 - K08770 twl:119989136 222.631