Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02011 ATGGCTAACCATCAATCTCTGTTAGACAAGCCTAAAAAATCTCTTTCCAAAACCATCTGTTTAATCCTTTCCATAGCTACTGTCATAAGCTTATCCTTTGTCGGTTCTTATCTCATCAAACCTACCTCCTTCTTCAATCAATCCTCCCTTCATCATGTCTGTGAACATGCACTTGATACAAAATCATGCTTTGCACATGTCTCACAAGTAGCACAAGGTCAAGTTATGACTGCTACAAAAGATCACAAATTCCAATTATTGCAGACCTTTCTAATGAAATCCACCTCACACATTCAGAGAGCTATGGACATGGCCGATTCTATCAAACAAAGAATCAACAGTCCTAGGGAGGAAGCAGCTCTGCGAGAGTGTGCAGAGCTGATGGACTTGTCCATTAATAGAGTTTGGGATTCAATGGTTGCTCTAGCCAAACAAACCATTGAGTCGCAACAAGATGCACACACATGGCTAAGTAGTGTGCTCACTAACCATGCAACTTGCTTGGATGGATTAGAAGGGTCAGCTAAGGCCCTTATGGAAGCTGAACTTGAGGACTTGATATCTAGATCAAGAACCTCTTTGGCCTTGCTTGTTGCTGTCTTGCCTCCAAAACATGAACAAATAATTCACGAGCCACTAAACGGAGACTTTCCCTCGTGGGTGACCGGCAAGGATCGGAGGTTGTTGGAGTCTTCGGTTAAGGATATCAAAGCCAATGTTGTGGTGGCTAAGGATGGAAGTGGCAGGTTTAAGACAGTGGCTGAGGCTGTGGCATCCGCACCCGACAATGGTAAAACGAGGTATGTTATTTATGTGAAAAAGGGAACATATAAAGAGAATGTTGAAATTGGTAGTAAGAAGAAGAACGTGATGCTGGTGGGGGATGGTAAGGATGCAACAGTAATTACCGGAAGCTTGAATTTCATAGATGGAACAAGCACATTCAAGACTGCCACCGTTGCTGCTGTGGGAGATGGATTTATAGCCCAAGACATATGGTTCCAAAACGCAGCAGGTCCTGAGAAGCATCAAGCAGTGGCTCTTCGTGTAGGCGCTGACCAATCTGTCATAAATCGTTGCCGCATTGATGCATATCAAGACACACTCTACGCTCACTCCAACAGACAATTCTACAGAGACTCCTTCATCACAGGTACAATTGACTTCATCTTTGGAAACGCAGCTGTTGTGTTCCAAAAATGCAACTTGGTGGCCAGAAAGCCCATGAGTAACCAGAAAAACATGGTGACGGCCCAAGGACGAGAGGATCCAAACCAAAACACAGGAACTTCAATTCAACAATGTACCCTAACACCAAGCTCGGATCTTAAGCCTGTTGTGGGCTCCTTCAAAACTTATTTGGGCCGTCCGTGGAAGAAGTACTCCAGAACCGTTGTTATGCAATCGACCTTGGACAGTCACATTGACCCAGCAGGATGGGCAGAATGGGATGCACAAAGTAAGGACTTTTTGCAAACATTGTATTATGGAGAATACATGAATAGTGGAGCAGGTGGTGGTACAAGCAAGAGAGTGAATTGGCCTGGTTACCATATCATCAAAACTGCAGCAGAAGCAAGCAAATTCACTGTGACACAACTCATCCAAGGCAATGTTTGGTTGAAGAACACTGGGGTCAACTTCATTGAAGGCCTCTAA 1659 0.443 MANHQSLLDKPKKSLSKTICLILSIATVISLSFVGSYLIKPTSFFNQSSLHHVCEHALDTKSCFAHVSQVAQGQVMTATKDHKFQLLQTFLMKSTSHIQRAMDMADSIKQRINSPREEAALRECAELMDLSINRVWDSMVALAKQTIESQQDAHTWLSSVLTNHATCLDGLEGSAKALMEAELEDLISRSRTSLALLVAVLPPKHEQIIHEPLNGDFPSWVTGKDRRLLESSVKDIKANVVVAKDGSGRFKTVAEAVASAPDNGKTRYVIYVKKGTYKENVEIGSKKKNVMLVGDGKDATVITGSLNFIDGTSTFKTATVAAVGDGFIAQDIWFQNAAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYAHSNRQFYRDSFITGTIDFIFGNAAVVFQKCNLVARKPMSNQKNMVTAQGREDPNQNTGTSIQQCTLTPSSDLKPVVGSFKTYLGRPWKKYSRTVVMQSTLDSHIDPAGWAEWDAQSKDFLQTLYYGEYMNSGAGGGTSKRVNWPGYHIIKTAAEASKFTVTQLIQGNVWLKNTGVNFIEGL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02011 552 Pfam Plant invertase/pectin methylesterase inhibitor 49 184 IPR006501 GO:0004857
Cca06g02011 552 SUPERFAMILY Pectin lyase-like 237 551 IPR011050 -
Cca06g02011 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 196 IPR035513 -
Cca06g02011 552 Gene3D - 233 552 IPR012334 -
Cca06g02011 552 PANTHER PECTINESTERASE 22 550 - -
Cca06g02011 552 CDD PMEI-like_4 56 200 - -
Cca06g02011 552 ProSitePatterns Pectinesterase signature 1. 264 283 IPR018040 -
Cca06g02011 552 SMART PMEI_2 45 196 IPR006501 GO:0004857
Cca06g02011 552 Pfam Pectinesterase 239 538 IPR000070 GO:0030599|GO:0042545
Cca06g02011 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 200 IPR035513 -
Cca06g02011 552 PANTHER PECTINESTERASE 22 550 - -
Cca06g02011 552 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Cca06g02011 552 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 184 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02011 Cca-Chr6 35364052 35366657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02011 1 552 Carbohydrate Esterase AT1G11580 56.738 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02011 K01051 - gmx:100815836 940.258