Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02009 ATGTTTCACACAAGCTTGTTTGATTCCCATCACCCTCACAATCTCATGACTACTTGCTCCGAGAGTGATTTGGGAAAGGCCAGAGACGATGAGTACGAGACCAAATCTGGCACCGATACCATGGACGTTCCTTCCGGCGACGACCAAGACCCCAACCCTCGTCCCAAAAAGAAGGGTTACCGTCGCCACACACAGCGCCAAATAGAAGAAATGGAAGCCTTCTTCAAGCAGTGTCCTCACCCAGATGACAAGCAAAGAAAAGAGCTCAGCCGTGAACTAGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAACATGAACGAAATGAGAATGCTATTCTGAAGGCCGAGAATGAAAAGCTTCGCGCTGAGAACAACAGGTACAAGGAGGCCCTAACCAATGCTTCATGCCCCAACTGTGGAGGCCCAGCTGCTCTTGGCGAAATGTCCTTCGACGAACAACACTTGAGGATTGAGAATGCTAGGTTAAGAGAGGAGATCGATAGGATTTCAGGAATTGCGTCCAAATATGTCGGAAAGCCCGTGACATCTTCATACTCCAACCTTTCACCTATGAATAACAACCACATGCATGTTGGAGAAATGTATGGCGGCAGTGACCTTCTTAGGTCACTCCCAGCTCCTGCTGATGCTGACAAACCCATGATTGTGGAGCTTGCCGTTGCAGCAATGGAGGAACTGACAAGACTGGCTCAGGCAGGAGACCCTTTATGGGTCCCCAACAACCACCAGTCTGAGAGTCTTAATGAAGATGAATACTTGAGGACTTTCCCCACTAGAGGCTTAGGCCCTAAACCCTTAGGCCTGAGATCTGAAGCTTCAAGGGAATCCGTGGTTGTCATCATGAATCACATTAACCTTATTGATATCCTGATGGATGTTAACCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCTTTGACCCTTGAAGTCCTTTCAACTGGAGTAGCTGGAAACTACAACGGAGCCTTGCAAGTGATGTCAGCGGAGTTCCAAGTTCCTTCACCACTTGTTCCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCATCCAGATGGGATATGGGCTGTGGTTGATGTTTCCTTGGATAGTCTGCGTCCCAGCACAATCTCAAGAAGCCGAAGAAGGCCCTCTGGTTGTTTAATTCAAGAATTGCCAAATGGATACTCCAAGGTTACATGGATTGAACATGTAGAAGTGGATGATAGAGCTGTGCATAGCATATATAAACCTCTAGTTAATTCTGGCCTTGCCTTTGGAGCTAAACGTTGGGTGGCTACGTTAGACAGACAATGCGAACGTCTTGCAAGTTCTATGGCCAAAAACATACCAGCAGGGGACCTCTGTGTGATAACGAGTCCTGAGGGAAGGAAAAGTATGCTGAAGCTGGCGGAGAGAATGGTAATTAGCTATTGCACTGGTGTTGGTGCTTCAACGGCACATGCTTGGACAACGCTATCCGCAACTGGATGTGATGATGTAAGGGTCATGACTAGAAAGAGCGCAGATGACCCTGGTAGACCCCCCGGCATAGTGCTCAGTGCTGCCACTTCTTTCTGGCTCCCAGTTCCCCCCAAGAGGCTTTTCGATTTCCTACGTGATGAAAATTCCAGAAATGAGTGGGACATTCTTTCCAACGGGGGTCTAGTTCAAGAATTGGCACACATAGCAAATGGTCGTGATCCTGGAAACTGTGTCTCTTTACTTCGAGTCAATAGTGCAAACTCAAGCCAAAGTAATATGCTGATACTGCAAGAGAGTTCAACTGATTCTACTGGCTCGTACGTAGTTTATGCTCCTGTGGATATTGTTGCTATGAATGTAGTATTGAGTGGAGGGGATCCAGATTATGTTGCTCTGTTGCCTTCGGGCTTCGCTATTCTTCCTGATGGGCCTGGACTAAACGAGGGGCCCATACTTGATGTTGGATCTGGAGGTTCTCTACTGACAGTTGCATTTCAGATCTTGGTTGATTCAGCCCCAACCGCTAAGCTATCTCTGGGTTCAGTGGCCACTGTTAACAGTTTAATTAAGTGCACAGTTGAAAGGATCAAAGTCGCAGTGAGCCAGTGA 2133 0.4735 MFHTSLFDSHHPHNLMTTCSESDLGKARDDEYETKSGTDTMDVPSGDDQDPNPRPKKKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERNENAILKAENEKLRAENNRYKEALTNASCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIASKYVGKPVTSSYSNLSPMNNNHMHVGEMYGGSDLLRSLPAPADADKPMIVELAVAAMEELTRLAQAGDPLWVPNNHQSESLNEDEYLRTFPTRGLGPKPLGLRSEASRESVVVIMNHINLIDILMDVNQWSTVFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQHPDGIWAVVDVSLDSLRPSTISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYKPLVNSGLAFGAKRWVATLDRQCERLASSMAKNIPAGDLCVITSPEGRKSMLKLAERMVISYCTGVGASTAHAWTTLSATGCDDVRVMTRKSADDPGRPPGIVLSAATSFWLPVPPKRLFDFLRDENSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESSTDSTGSYVVYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPGLNEGPILDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVSQ 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02009 710 Pfam START domain 235 454 IPR002913 GO:0008289
Cca06g02009 710 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Cca06g02009 710 SUPERFAMILY Homeodomain-like 41 114 IPR009057 -
Cca06g02009 710 Gene3D - 302 457 IPR023393 -
Cca06g02009 710 ProSiteProfiles START domain profile. 225 457 IPR002913 GO:0008289
Cca06g02009 710 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 16 709 - -
Cca06g02009 710 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 709 IPR042160 -
Cca06g02009 710 CDD START_ArGLABRA2_like 229 453 - -
Cca06g02009 710 SMART HOX_1 56 118 IPR001356 GO:0003677
Cca06g02009 710 SUPERFAMILY Bet v1-like 226 456 - -
Cca06g02009 710 Coils Coil 108 143 - -
Cca06g02009 710 Pfam Homeodomain 57 112 IPR001356 GO:0003677
Cca06g02009 710 MobiDBLite consensus disorder prediction 23 37 - -
Cca06g02009 710 SMART START_1 234 454 IPR002913 GO:0008289
Cca06g02009 710 MobiDBLite consensus disorder prediction 1 21 - -
Cca06g02009 710 MobiDBLite consensus disorder prediction 1 64 - -
Cca06g02009 710 SUPERFAMILY Bet v1-like 474 704 - -
Cca06g02009 710 Gene3D - 45 130 - -
Cca06g02009 710 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Cca06g02009 710 CDD homeodomain 57 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02009 Cca-Chr6 35336137 35345804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02009 1 709 Homeobox Transcription Factor Family AT4G21750 76.153 0.0 1159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca06g02009 START 1e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02009 K09338 - gmx:100815499 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02009 06 35336137 35345804 Cca02g02421 02 45270041 45276070 PCT