Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02004 ATGGGTCCGATCCTACAAACCATTGTGACTGTGctccttctccttatgcttcttctcatcatcattttcctcttctttctcttcAAACCATGGCGCTTCTTTTCCTCTTCGCGCTTCCGCTCCTCAAACAAGGGCGAGCTAGATAGGCCCCTCGTTCTATCCGAAGACGATGCAAATGCGTCGTCGTTTAATCAGAATCAGACCAATGAATTGCCTAGGGATTATGATCTCGAGGGCGCCTGTTATCCCACTGAAGCTCATTTTCGCTCTCCCAGAACTCATGGCCAAGGCCTTGTTCATAAGCAAAGGCTTCAAACCCTTTCCGCTTCACCTAACATGCCTCAGGCTGGTGATACTCTCATTGTCGATGTAATCTCCGATCCTTCCTCTGAAGACGTTGACGTTGGTCAAACGCTTAAGCTTCCCGCAGCTCATTTAGCTCAAATTCATAAGCATGGCCCGCCCACTTTCCAAACTGAAAGACTTCACCACTTTGTCGAAAGAGATATCTCTGATCAAAGAAGTTGCCTCACTCTGGAGGTTATCAGTGGCCCTTCTCAGGGACTCCGGTGTTCCGTGCAGTCGACAAACCCCTCTCGTCTACCCCTCACCTTGGGGAGGGTTTCTCCAAGTGATTTGTTGATCAAGGATTCAGAAGTGTCGGGAAAGCATGCGTTGATCAAGTGGAATTTGGATAAAATGAAATGGGAGTTGGTGGATATGGGTAGTCTGAATGGAACGCTGTTGAATTCCAAGCCAATCAACCATCCGGACACTGGAAGTAGGAACTGGGGAGATTCGATGAATCTTGCTAATGGAGATATCATAACACTTGGAACAACGTCAAAAATAATGGTTCATGTTACTTCGCAAACTCAGCATCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCCATGGCTTTGCGTCGAGGAGGAAAAAAGCTTCCTATGGAAGACATGTGCTATTATCAATGGCCTCTACCTGGGCTGGATCAGTTTGGACTTTTTGGCATTTGTGATGGGCATGGTGGAGATGGGGCTGCCAAATCTGCTAGCAAACTTTTTCCTGAGATAATTGCTAGCATTTTATCGGATTCATTAAAAAGGGAAAGGGTTTTATCACTCTGTGATGCTTCAGATATTCTTCGAGATGCATTTTCTCAAACAGAAGCACACATGAATCACTATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGACTGATGGCAATGAAAATTTCTTTGCGCAATGTGCTAATGTTGGAGACTCCGCCTGCATTATGAGTGTGAATGGGAAACAAATCAAGATGACAGAAGATCACAAGATAGCGAATTATTCTGAAAGACTCAGAATCGAAGAAACAGGTGAACCATTAAAAGATGGGGAAACACGTCTATATGGTATAAATCTGGCAAGAATGCTTGGGGACAAATTCCTGAAACAGCAGGATTCCCGGTTCAGTTCAGAACCTTACATAAGTCAAGTGGTGCATATTGATGAAGCAAGCAAGGCTTTTGCTATTCTAGCTAGGTAA 1542 0.4351 MGPILQTIVTVLLLLMLLLIIIFLFFLFKPWRFFSSSRFRSSNKGELDRPLVLSEDDANASSFNQNQTNELPRDYDLEGACYPTEAHFRSPRTHGQGLVHKQRLQTLSASPNMPQAGDTLIVDVISDPSSEDVDVGQTLKLPAAHLAQIHKHGPPTFQTERLHHFVERDISDQRSCLTLEVISGPSQGLRCSVQSTNPSRLPLTLGRVSPSDLLIKDSEVSGKHALIKWNLDKMKWELVDMGSLNGTLLNSKPINHPDTGSRNWGDSMNLANGDIITLGTTSKIMVHVTSQTQHHIPFGVGMASDPMALRRGGKKLPMEDMCYYQWPLPGLDQFGLFGICDGHGGDGAAKSASKLFPEIIASILSDSLKRERVLSLCDASDILRDAFSQTEAHMNHYYEGCTATVLLVWTDGNENFFAQCANVGDSACIMSVNGKQIKMTEDHKIANYSERLRIEETGEPLKDGETRLYGINLARMLGDKFLKQQDSRFSSEPYISQVVHIDEASKAFAILAR 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02004 513 SUPERFAMILY SMAD/FHA domain 175 285 IPR008984 GO:0005515
Cca06g02004 513 Pfam FHA domain 204 279 IPR000253 GO:0005515
Cca06g02004 513 CDD PP2Cc 311 512 IPR001932 -
Cca06g02004 513 ProSitePatterns PPM-type phosphatase domain signature. 336 344 IPR000222 GO:0043169
Cca06g02004 513 ProSiteProfiles PPM-type phosphatase domain profile. 299 513 IPR001932 -
Cca06g02004 513 Pfam Protein phosphatase 2C 310 512 IPR001932 -
Cca06g02004 513 PANTHER PROTEIN PHOSPHATASE 2C 34 512 IPR015655 GO:0004722|GO:0006470
Cca06g02004 513 SUPERFAMILY PP2C-like 312 503 IPR036457 -
Cca06g02004 513 SMART FHA_2 202 254 IPR000253 GO:0005515
Cca06g02004 513 CDD FHA 177 282 IPR000253 GO:0005515
Cca06g02004 513 Gene3D - 307 512 IPR036457 -
Cca06g02004 513 PANTHER PROTEIN PHOSPHATASE 2C 70 34 512 - -
Cca06g02004 513 Gene3D - 171 306 - -
Cca06g02004 513 ProSiteProfiles Forkhead-associated (FHA) domain profile. 203 254 IPR000253 GO:0005515
Cca06g02004 513 SMART PP2C_4 293 512 IPR001932 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02004 1 512 PP2C-type Phosphatase Gene Family AT5G19280 55.556 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02004 K01090 - gmx:100170642 872.848