Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02003 ATGGAGCAAGCGGTGTCACTGATTGGTGCTCTCAACCTCGTTTCCCGCAACCTCCCTCTTCCCCCTGACCTCCTTCACACCGTTTCCTCTATCTATCTCCGATCTCACTCCTCCGCTGACGCTCCCCAACAAGATTTGTTCGCCGACCTTCAAGATGCGCTGTTGAACCAACGCCCTCACCGCTCCTCCGCTTCCAAATTGCACAAAGCAATGGAAAGCCGTTACCAGACTCGGATTCACCACCGCTTAACCCAGCTCCAAGCTTTGCCTTCAACCAGAGGGGAGGACCTACAGACTAGGTGCCTGCTTGAGCTTTATGGATTGATGCTAGCTGAGTTGCAGAGGAAGGTGCGGACTGATGTGAGTTCTGAATACTGGCTCAATGTCCAGTGTGCATATCCTGACAGGCAATTGTTTGATTGGAGCATGATGAGGTTACGTCGTCCGCCCTATGGTGTTGGAGATCCATTTGCCATGGATGCCGATGATCAAATAAGGAAGAAACGGGATGCTGAGAGACTATCAAGATTGGAAGAGCAGGCAAAGAATCATATAGAGACCAGAAAAAGAAGATTTTTTGCAGAAATACTGAATACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCCATGAAGAGGAGAAAACAAAGGAATGATGGTGTTCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTGGGAGCAGCTGTTCAACGTCAAAAGGACTCAAAACTATCAGATGGTATTGAACCCTTGGAAGACTCAGAAACTGATTTACCTGAGTCAGATGGATTGAAGAACGCAATTTCTAAAGAATCACCTCTTGAGGAAGATGTGGATTTGACAGATTCTGATCATAATGGTGGTGATGCTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAGCCATCTATTCTTCAAGGTGGAGAATTAAGACCATACCAGCTAGAAGGCCTTCAGTGGATGCTTTCTTTGTTCAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACCATACAGACCATCTCATTGATAGCATATCTAATGGAACACAAGGGTGTGACTGGTCCTCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCTCAACATGGGCTCCTAGCATAACAACCATTCTGTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAATTGTCAGGGGAGGGGAAATTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATCCAGTGGCACTACTTGATTGTGGATGAAGGGCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTGGCTATCACATTCAACGAAGACTTCTGTTGACTGGCACCCCAATTCAGAACAGTTTGCAGGAATTATGGTCCCTGCTCAATTTTCTCCTTCCAAACATTTTCAATTCAGTTCAGAATTTCGAGGATTGGTTTAATGCTCCCTTTGCAGATCGAGTTGATGTCTCTCTAAATGATGAAGAACAGTTATTGGTCATTCGCCGTCTGCATCAAGTGATAAGGCCCTTCATATTGAGAAGGAAAAAGGATGAGGTGGAAAAGTTTCTTCCTAGCAAATCTCAGGTCATACTCAAATGTGATTTGTCCGCCTGGCAGAAAGTATATTATCAACAAGTCACTGATGTGGGGAGAGTTGGCTTAGACAATGGTGCTGGAAAATCAAAAAGTTTACAGAACTTGACAATGCAACTCAGAAAATGCTGTAACCATCCCTACCTCTTTGTGGGTGACTATGATATCTATAAACACAAGGAGGAGATTGTCAGTGCATCAGGAAAGTTTGAACTTCTTGATCGTTTGCTTCCAAAACTTCGTAGAGCTGGTCACAGAGTTCTCCTTTTTTCACAGATGACTCGTCTCATGGACATTCTTGAAGTTTATCTGCGACTTCATGATTTTAAATTTCTTAGACTTGATGGTTCAACAAAAACTGAGGAAAGAGGTTCCCTACTAAGGAAATTTAATGCACCTGATTCTCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATTATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCTGAAGATCGAGCACATCGCATTGGACAAAAAAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCTAAACAAAAGATGGGCATTGATGCTAAAGTCATTCAGGCTGGGCTTTTTAACACAACTTCAACAGCTCAAGATAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTACTAGCTCACTTGGTACAGATGTGCCAAGTGAGAGAGAAATTAACCGCCTCGCAGCCCGATCTGACGAGGAATTTTGGCTGTTCGAGAGAATGGATGAAGAGCGAAGGCAAAAGGAGAATTACAAATCTCGTCTCATGGAAGAGCATGAAGTTCCAGATTGGGTGTACTCTCCACTAAATAAGGATGATAAGGTCAAAGTTTTTGACAGTGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTACAATGGATGAAGGCTGTGGAGAATGGACACGACATATCTAAGGTTTCCGTCAAAGGGAAAAGAAGAGACCATTTCCCTGTAGACAACCATTCACAAGCTAGTGATGACAAGGGGACAGAAGAACGGTTACTAGAGTTAAGGAATGAGAGATCAAGTGAAGACACTTTCGAGGTGAGCCCTGCCTCTAAGAGACAAAGGCATGAAGAAATAAATTCTCAGAAACATGAAACTGAAGGTGTCAGAGTTGGTGGTTTGAACGAACATATATTTTCTTGGAATACTCACAAAAAGAAGAGATCAAACTATCTTGGCCAGGGTTCATTCTCTGATAGTAGAGGGTAG 3171 0.4257 MEQAVSLIGALNLVSRNLPLPPDLLHTVSSIYLRSHSSADAPQQDLFADLQDALLNQRPHRSSASKLHKAMESRYQTRIHHRLTQLQALPSTRGEDLQTRCLLELYGLMLAELQRKVRTDVSSEYWLNVQCAYPDRQLFDWSMMRLRRPPYGVGDPFAMDADDQIRKKRDAERLSRLEEQAKNHIETRKRRFFAEILNTVREFQLQIQASMKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKLSDGIEPLEDSETDLPESDGLKNAISKESPLEEDVDLTDSDHNGGDASDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEHKGVTGPHLIVAPKAVLPNWINEFSTWAPSITTILYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIQWHYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLNDEEQLLVIRRLHQVIRPFILRRKKDEVEKFLPSKSQVILKCDLSAWQKVYYQQVTDVGRVGLDNGAGKSKSLQNLTMQLRKCCNHPYLFVGDYDIYKHKEEIVSASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLRLHDFKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYKSRLMEEHEVPDWVYSPLNKDDKVKVFDSGSVTGKRKRKEVVYADTLSDLQWMKAVENGHDISKVSVKGKRRDHFPVDNHSQASDDKGTEERLLELRNERSSEDTFEVSPASKRQRHEEINSQKHETEGVRVGGLNEHIFSWNTHKKKRSNYLGQGSFSDSRG 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02003 1056 Pfam Helicase conserved C-terminal domain 679 792 IPR001650 -
Cca06g02003 1056 SMART helicmild6 708 792 IPR001650 -
Cca06g02003 1056 MobiDBLite consensus disorder prediction 1039 1056 - -
Cca06g02003 1056 Gene3D - 599 899 IPR027417 -
Cca06g02003 1056 Coils Coil 880 903 - -
Cca06g02003 1056 Coils Coil 167 187 - -
Cca06g02003 1056 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 682 849 IPR001650 -
Cca06g02003 1056 SMART SnAC_2 885 946 IPR029295 GO:0042393
Cca06g02003 1056 MobiDBLite consensus disorder prediction 314 335 - -
Cca06g02003 1056 CDD SF2_C_SNF 670 803 - -
Cca06g02003 1056 Gene3D - 337 592 IPR038718 -
Cca06g02003 1056 SMART ultradead3 364 557 IPR014001 -
Cca06g02003 1056 Pfam SNF2-related domain 371 659 IPR000330 GO:0005524|GO:0140658
Cca06g02003 1056 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 380 546 IPR014001 -
Cca06g02003 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 593 IPR027417 -
Cca06g02003 1056 MobiDBLite consensus disorder prediction 1037 1056 - -
Cca06g02003 1056 Pfam Snf2-ATP coupling, chromatin remodelling complex 881 946 IPR029295 GO:0042393
Cca06g02003 1056 MobiDBLite consensus disorder prediction 286 335 - -
Cca06g02003 1056 PANTHER ATP-DEPENDENT HELICASE BRM 45 1018 - -
Cca06g02003 1056 MobiDBLite consensus disorder prediction 957 1025 - -
Cca06g02003 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 846 IPR027417 -
Cca06g02003 1056 PANTHER SNF2/RAD54 HELICASE FAMILY 45 1018 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02003 Cca-Chr6 35246166 35253427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02003 665 820 RAD5 or RAD16-like Gene Family AT5G43530 36.875 2.12e-21 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca06g02003 SNF2_N 1.8e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02003 - - gmx:100775993 1907.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02003 06 35246166 35253427 Cca06g02003 06 35246166 35253427 ECH